Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K17
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   175   9e-45
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   175   9e-45
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.63 
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    27   4.4  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   4.4  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   5.9  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   7.8  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  175 bits (425), Expect = 9e-45
 Identities = 79/139 (56%), Positives = 103/139 (74%)
 Frame = -3

Query: 597 KKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFG 418
           +KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR R+RK   A+R GRH G+G
Sbjct: 20  RKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYG 79

Query: 417 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 238
           KR+GTA ARMP   +W              R + KID+HLYH+LY++AKGN FK+KR L+
Sbjct: 80  KRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALI 139

Query: 237 EYIHRKKAEKARTKMLSDQ 181
           E+I R KAE  RTK++ +Q
Sbjct: 140 EHIQRAKAEANRTKLIQEQ 158



 Score = 33.1 bits (72), Expect = 0.051
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = -1

Query: 647 SLKLQKRLAASVMRCGKRR 591
           +L+ QKRLAASV++CGKR+
Sbjct: 3   NLRTQKRLAASVLKCGKRK 21


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  175 bits (425), Expect = 9e-45
 Identities = 79/139 (56%), Positives = 103/139 (74%)
 Frame = -3

Query: 597 KKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFG 418
           +KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR R+RK   A+R GRH G+G
Sbjct: 20  RKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYG 79

Query: 417 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 238
           KR+GTA ARMP   +W              R + KID+HLYH+LY++AKGN FK+KR L+
Sbjct: 80  KRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALI 139

Query: 237 EYIHRKKAEKARTKMLSDQ 181
           E+I R KAE  RTK++ +Q
Sbjct: 140 EHIQRAKAEANRTKLIQEQ 158



 Score = 33.1 bits (72), Expect = 0.051
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = -1

Query: 647 SLKLQKRLAASVMRCGKRR 591
           +L+ QKRLAASV++CGKR+
Sbjct: 3   NLRTQKRLAASVLKCGKRK 21


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 452 SVFLRTRAREWTATGFLMTRPSLIILRMFC 541
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 514 ILDHLTDVLSGVGVCDLIDFIWIQPHLLLPHRITEAASLFCSL 642
           ++   TD++   G  D   F+W +   L   R ++  S  CSL
Sbjct: 61  VMSEFTDIVLAYGDSDEYSFVWSKSTELYERRESKLVSHVCSL 103


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = +1

Query: 106 FLLLGGNT-----FLAALACLLYFIAAGL 177
           F+  GGN      FL A  C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 375 VPSVAYAHWQYLFSYQS 425
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 215 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 307
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,500
Number of Sequences: 5004
Number of extensions: 58512
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)