Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K17
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 191 7e-49
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 191 7e-49
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.29
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 31 1.2
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 31 1.2
03_02_0050 + 5272471-5274861 30 2.0
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 4.7
04_04_1687 - 35365766-35366356,35367137-35368135 29 6.2
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375... 29 6.2
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 6.2
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 191 bits (465), Expect = 7e-49
Identities = 87/138 (63%), Positives = 104/138 (75%)
Frame = -3
Query: 594 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 415
KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+ EA++KGRH G+GK
Sbjct: 21 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGK 80
Query: 414 RRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 235
RRGT AR+P K LW R AKKID+H+YH +YMK KGN+FKNKRVLME
Sbjct: 81 RRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLME 140
Query: 234 YIHRKKAEKARTKMLSDQ 181
IH+ KAEKAR K LSDQ
Sbjct: 141 SIHKSKAEKAREKTLSDQ 158
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1
Query: 647 SLKLQKRLAASVMRCGKRRCGWI 579
SLKLQKRLA+SV++CGK + W+
Sbjct: 3 SLKLQKRLASSVLKCGKGKV-WL 24
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 191 bits (465), Expect = 7e-49
Identities = 87/138 (63%), Positives = 104/138 (75%)
Frame = -3
Query: 594 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 415
KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+ EA++KGRH G+GK
Sbjct: 21 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGK 80
Query: 414 RRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 235
RRGT AR+P K LW R AKKID+H+YH +YMK KGN+FKNKRVLME
Sbjct: 81 RRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLME 140
Query: 234 YIHRKKAEKARTKMLSDQ 181
IH+ KAEKAR K LSDQ
Sbjct: 141 SIHKSKAEKAREKTLSDQ 158
Score = 35.1 bits (77), Expect = 0.071
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -1
Query: 647 SLKLQKRLAASVMRCGKRRCGWI 579
SLKLQKRLAASV++CGK + W+
Sbjct: 3 SLKLQKRLAASVLKCGKGKV-WL 24
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.29
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -3
Query: 282 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 181
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 588 WLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFG 418
W D E+N + + R + KM+ D LV+ +A H + T RKGR GFG
Sbjct: 765 WDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRNDEETTSISRKGRAQGFG 822
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 588 WLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFG 418
W D E+N + + R + KM+ D LV+ +A H + T RKGR GFG
Sbjct: 716 WDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRNDEETTSISRKGRAQGFG 773
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 109 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 267
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 570 INEIANTNSRQNIRKMIKDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 397
+ E N NS + + GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 505 HQETCSSPLPRPCPQKHR 452
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>03_05_0175 +
21513767-21513903,21534361-21535385,21537375-21537547,
21537849-21538679
Length = 721
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -1
Query: 662 PCQDGSLKLQK-RLAASVMRCGKRRCGW 582
PC S++L+K R A +V RCG R GW
Sbjct: 13 PCPFQSVELEKDRAALAVRRCGWSREGW 40
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 513 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 400
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,912,114
Number of Sequences: 37544
Number of extensions: 452101
Number of successful extensions: 1252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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