BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_K17 (848 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 185 4e-47 Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 31 0.78 U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 31 1.0 Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical pr... 30 2.4 Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 29 5.5 AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical ... 28 7.3 >AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal protein, large subunitprotein 19 protein. Length = 198 Score = 185 bits (450), Expect = 4e-47 Identities = 83/138 (60%), Positives = 104/138 (75%) Frame = -3 Query: 594 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 415 +VWLDPNE++EI+ NSRQ+IR+++ DGL+I+KPV VHSR R R+ EARRKGRH G+GK Sbjct: 21 RVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGK 80 Query: 414 RRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 235 RRGTANARMP+K LW R AKK+D+HLYH LY++AKGN FKNK+ L+E Sbjct: 81 RRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIE 140 Query: 234 YIHRKKAEKARTKMLSDQ 181 YI +KK E R K L+DQ Sbjct: 141 YIFKKKTENKRAKQLADQ 158 Score = 32.3 bits (70), Expect = 0.45 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = -1 Query: 647 SLKLQKRLAASVMRCGKRRCGWI 579 +L+LQKRLA++V++CGK R W+ Sbjct: 3 NLRLQKRLASAVLKCGKHRV-WL 24 >Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein ZC373.4 protein. Length = 1211 Score = 31.5 bits (68), Expect = 0.78 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = -3 Query: 558 ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 424 ++T+S +N+R ++ D +K V H R ++E R+K R G Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099 >U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical protein K09E3.1 protein. Length = 675 Score = 31.1 bits (67), Expect = 1.0 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -1 Query: 155 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 51 RRHAS +PP NC +P+ ++T+ + L ++ Sbjct: 14 RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48 >Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical protein F15D3.2 protein. Length = 376 Score = 29.9 bits (64), Expect = 2.4 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 108 PPSWRQYVPRGACVPPL 158 P SW QY P+G C+ P+ Sbjct: 221 PNSWHQYQPKGTCIQPV 237 >Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical protein ZK1058.5 protein. Length = 269 Score = 28.7 bits (61), Expect = 5.5 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -3 Query: 546 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 433 S +N+RKMIK G V+ + ++ A +R EAR R Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208 >AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical protein C44B12.6 protein. Length = 162 Score = 28.3 bits (60), Expect = 7.3 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -1 Query: 134 RNVLPPRRRNCCRPSLEKTKPRLP 63 R++L P+ R+C PS++K+ LP Sbjct: 51 RHMLTPKSRDCSEPSIDKSSEVLP 74 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,921,377 Number of Sequences: 27780 Number of extensions: 357314 Number of successful extensions: 928 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 893 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 927 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2108493618 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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