BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_K17 (848 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 184 7e-47 At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 184 9e-47 At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 180 8e-46 At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 4e-05 At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 5.2 At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 6.8 At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 9.0 At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 9.0 >At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar to ribosomal protein L19 GB:CAA45090 from [Homo sapiens] Length = 209 Score = 184 bits (448), Expect = 7e-47 Identities = 84/138 (60%), Positives = 101/138 (73%) Frame = -3 Query: 594 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 415 KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR+R R EA+RKGRH G+GK Sbjct: 21 KVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGK 80 Query: 414 RRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 235 R+GT AR+P K LW R +KKIDRH+YH +YMK KGNVFKNKRVLME Sbjct: 81 RKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLME 140 Query: 234 YIHRKKAEKARTKMLSDQ 181 IH+ KAEKAR K L+DQ Sbjct: 141 SIHKMKAEKAREKTLADQ 158 Score = 35.5 bits (78), Expect = 0.045 Identities = 16/23 (69%), Positives = 20/23 (86%) Frame = -1 Query: 647 SLKLQKRLAASVMRCGKRRCGWI 579 SLK+QKRLAASVM+CGK + W+ Sbjct: 3 SLKIQKRLAASVMKCGKGKV-WL 24 >At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar to L19 from several species Length = 208 Score = 184 bits (447), Expect = 9e-47 Identities = 84/139 (60%), Positives = 102/139 (73%) Frame = -3 Query: 597 KKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFG 418 +KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR+R R+ A+RKGRH G+G Sbjct: 20 RKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYG 79 Query: 417 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 238 KR+GT AR+P K LW R KKIDRH+YH +YMK KGNVFKNKRVLM Sbjct: 80 KRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLM 139 Query: 237 EYIHRKKAEKARTKMLSDQ 181 E IH+ KAEKAR K LSDQ Sbjct: 140 ESIHKSKAEKAREKTLSDQ 158 Score = 36.7 bits (81), Expect = 0.019 Identities = 16/23 (69%), Positives = 21/23 (91%) Frame = -1 Query: 647 SLKLQKRLAASVMRCGKRRCGWI 579 SLKLQKRLA+SV++CGKR+ W+ Sbjct: 3 SLKLQKRLASSVLKCGKRKV-WL 24 >At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar to ribosomal protein L19 GI:36127 from [Homo sapiens] Length = 214 Score = 180 bits (439), Expect = 8e-46 Identities = 82/138 (59%), Positives = 100/138 (72%) Frame = -3 Query: 594 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 415 KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR+R RK A+ KGRH G+GK Sbjct: 21 KVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGK 80 Query: 414 RRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 235 R+GT AR+P K LW R KKID+H+YH +YM+ KGNVFKNKRVLME Sbjct: 81 RKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLME 140 Query: 234 YIHRKKAEKARTKMLSDQ 181 IH+ KAEKAR K LSDQ Sbjct: 141 SIHKSKAEKAREKTLSDQ 158 Score = 36.3 bits (80), Expect = 0.026 Identities = 17/23 (73%), Positives = 20/23 (86%) Frame = -1 Query: 647 SLKLQKRLAASVMRCGKRRCGWI 579 SLKLQKRLAASVM+CGK + W+ Sbjct: 3 SLKLQKRLAASVMKCGKGKV-WL 24 >At4g16030.1 68417.m02432 60S ribosomal protein L19, putative similar to 60S ribosomal protein L19-3 (Swiss-Prot:P49693) [Arabidopsis thaliana] Length = 101 Score = 45.6 bits (103), Expect = 4e-05 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%) Frame = -3 Query: 318 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 208 KKID+ +Y H ++MK KG V+KNK VLME +H+ E+ Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66 >At3g30842.1 68416.m03968 ABC transporter protein, putative similar to pleiotropic drug resistance like protein [Nicotiana tabacum] GI:20522008, ABC1 protein [Nicotiana plumbaginifolia] GI:14331118; contains Pfam profile PF00005: ABC transporter Length = 1406 Score = 28.7 bits (61), Expect = 5.2 Identities = 9/24 (37%), Positives = 19/24 (79%) Frame = +2 Query: 182 WSLSIFVLAFSAFFLWMYSMSTRL 253 W +S+ ++AFS FF+++Y+ S ++ Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400 >At1g59910.1 68414.m06749 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02128 Length = 929 Score = 28.3 bits (60), Expect = 6.8 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -3 Query: 516 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 397 D + KK + + + ++RKN + RR+G G G RR A+ Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116 >At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol protease, putative similar to cysteine proteinase RD21A precursor (thiol protease) GI:435619, SP:P43297 from [Arabidopsis thaliana] Length = 463 Score = 27.9 bits (59), Expect = 9.0 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +2 Query: 494 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 589 GFL P +++L M + +S+IS+ NH Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33 >At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing protein / MATH domain-containing protein weak similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain Length = 1663 Score = 27.9 bits (59), Expect = 9.0 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 163 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 279 IA L KHL+P L+SL+P V H EH L + RL Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,040,109 Number of Sequences: 28952 Number of extensions: 336605 Number of successful extensions: 891 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 862 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 888 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1970388800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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