Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K17
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   184   7e-47
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   184   9e-47
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...   180   8e-46
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    46   4e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    29   5.2  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   6.8  
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    28   9.0  
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    28   9.0  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  184 bits (448), Expect = 7e-47
 Identities = 84/138 (60%), Positives = 101/138 (73%)
 Frame = -3

Query: 594 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 415
           KVWLDPNE  +I+  NSRQNIRK++KDG +I+KP  +HSR+R R   EA+RKGRH G+GK
Sbjct: 21  KVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGK 80

Query: 414 RRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 235
           R+GT  AR+P K LW              R +KKIDRH+YH +YMK KGNVFKNKRVLME
Sbjct: 81  RKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLME 140

Query: 234 YIHRKKAEKARTKMLSDQ 181
            IH+ KAEKAR K L+DQ
Sbjct: 141 SIHKMKAEKAREKTLADQ 158



 Score = 35.5 bits (78), Expect = 0.045
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = -1

Query: 647 SLKLQKRLAASVMRCGKRRCGWI 579
           SLK+QKRLAASVM+CGK +  W+
Sbjct: 3   SLKIQKRLAASVMKCGKGKV-WL 24


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =  184 bits (447), Expect = 9e-47
 Identities = 84/139 (60%), Positives = 102/139 (73%)
 Frame = -3

Query: 597 KKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFG 418
           +KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR+R R+   A+RKGRH G+G
Sbjct: 20  RKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYG 79

Query: 417 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 238
           KR+GT  AR+P K LW              R  KKIDRH+YH +YMK KGNVFKNKRVLM
Sbjct: 80  KRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLM 139

Query: 237 EYIHRKKAEKARTKMLSDQ 181
           E IH+ KAEKAR K LSDQ
Sbjct: 140 ESIHKSKAEKAREKTLSDQ 158



 Score = 36.7 bits (81), Expect = 0.019
 Identities = 16/23 (69%), Positives = 21/23 (91%)
 Frame = -1

Query: 647 SLKLQKRLAASVMRCGKRRCGWI 579
           SLKLQKRLA+SV++CGKR+  W+
Sbjct: 3   SLKLQKRLASSVLKCGKRKV-WL 24


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score =  180 bits (439), Expect = 8e-46
 Identities = 82/138 (59%), Positives = 100/138 (72%)
 Frame = -3

Query: 594 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 415
           KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR+R RK   A+ KGRH G+GK
Sbjct: 21  KVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGK 80

Query: 414 RRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 235
           R+GT  AR+P K LW              R  KKID+H+YH +YM+ KGNVFKNKRVLME
Sbjct: 81  RKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLME 140

Query: 234 YIHRKKAEKARTKMLSDQ 181
            IH+ KAEKAR K LSDQ
Sbjct: 141 SIHKSKAEKAREKTLSDQ 158



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = -1

Query: 647 SLKLQKRLAASVMRCGKRRCGWI 579
           SLKLQKRLAASVM+CGK +  W+
Sbjct: 3   SLKLQKRLAASVMKCGKGKV-WL 24


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = -3

Query: 318 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 208
           KKID+ +Y H ++MK KG V+KNK VLME +H+   E+
Sbjct: 29  KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +2

Query: 182  WSLSIFVLAFSAFFLWMYSMSTRL 253
            W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 516 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 397
           D +  KK + + +  ++RKN + RR+G   G G RR  A+
Sbjct: 77  DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 494 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 589
           GFL   P +++L M  +     +S+IS+  NH
Sbjct: 2   GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 163  IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 279
            IA  L    KHL+P L+SL+P  V H EH L    +  RL
Sbjct: 974  IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,040,109
Number of Sequences: 28952
Number of extensions: 336605
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)