Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K15
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 270 2e-73
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 264 8e-72
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 107 1e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 1e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 32 0.11
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 29 0.78
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 3.2
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.2
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.5
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 7.3
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 270 bits (662), Expect = 2e-73
Identities = 127/188 (67%), Positives = 147/188 (78%), Gaps = 1/188 (0%)
Frame = -3
Query: 693 EFQTNLVPYPRIHFPTGHVRASHLCREGLPMNSFPSPRSQTHASSPP-TRW*NATPRHGK 517
EFQTNLVPYPRIHFP V S + + S + T+ P + PR G+
Sbjct: 258 EFQTNLVPYPRIHFPL--VTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGR 315
Query: 516 YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 337
YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV
Sbjct: 316 YMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKV 375
Query: 336 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 157
RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+D
Sbjct: 376 NRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERD 435
Query: 156 YEEVGMDS 133
YEEVG DS
Sbjct: 436 YEEVGQDS 443
Score = 78.2 bits (184), Expect = 1e-15
Identities = 44/80 (55%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = -2
Query: 763 IGQIVSSITASLRFDGALNVDLTRVPD*LGALPPYPLPHWSRTRQSSL--PRRPTHEQLS 590
I Q+VSSITASLRF G+LNVDL L PYP H+ S + + HE S
Sbjct: 235 IAQVVSSITASLRFAGSLNVDLNEFQT---NLVPYPRIHFPLVTYSPIVSAAKAFHESNS 291
Query: 589 VAEITNACFEPANQMVKCDP 530
V EITN CFEP NQMVKCDP
Sbjct: 292 VQEITNQCFEPYNQMVKCDP 311
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 264 bits (648), Expect = 8e-72
Identities = 125/188 (66%), Positives = 145/188 (77%), Gaps = 1/188 (0%)
Frame = -3
Query: 693 EFQTNLVPYPRIHFPTGHVRASHLCREGLPMNSFPSPRSQTHASSPP-TRW*NATPRHGK 517
EFQTNLVPYPRIHFP V + + + S + T+ P + PR G+
Sbjct: 254 EFQTNLVPYPRIHFPL--VTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGR 311
Query: 516 YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 337
YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV
Sbjct: 312 YMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKV 371
Query: 336 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 157
RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+D
Sbjct: 372 DRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERD 431
Query: 156 YEEVGMDS 133
YEEVG DS
Sbjct: 432 YEEVGQDS 439
Score = 78.6 bits (185), Expect = 1e-15
Identities = 43/80 (53%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = -2
Query: 763 IGQIVSSITASLRFDGALNVDLTRVPD*LGALPPYPLPHWSRTRQSSL--PRRPTHEQLS 590
I Q+VSSITASLRF+G+LNVDL L PYP H+ + + + HE S
Sbjct: 231 IAQVVSSITASLRFEGSLNVDLAEFQT---NLVPYPRIHFPLVTYAPIVSAAKAFHESNS 287
Query: 589 VAEITNACFEPANQMVKCDP 530
V EITN CFEP NQMVKCDP
Sbjct: 288 VQEITNQCFEPYNQMVKCDP 307
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 107 bits (258), Expect = 1e-24
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 4/186 (2%)
Frame = -3
Query: 681 NLVPYPRIHF-PTGHVRASHLCREGLPMNSFPSPRSQTHASSPPTRW*NATPRHGKYMAC 505
N+VP+PR+HF G + + S P Q ++ A PRHG+Y+
Sbjct: 256 NMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDAN--NMMVAADPRHGRYLTV 313
Query: 504 CMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 325
L+RG V K+V+ I +++TK + FV+W P + PP DL + +
Sbjct: 314 AALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSA 365
Query: 324 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDY 154
+ N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y
Sbjct: 366 TFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
Query: 153 EEVGMD 136
+E G+D
Sbjct: 426 QEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 52.0 bits (119), Expect = 1e-07
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Frame = -3
Query: 498 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 319
+ +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + M
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----M 377
Query: 318 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 151
L+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = -2
Query: 790 PNXHQPXFFIGQIVSSITASLRFDGALNVDLTRVPD*LGALPPYPLPHWSRTRQSSLPRR 611
P HQ + ++S+ T +LR+ G +N DL + + +L P P H+ T + +
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSI---IASLIPSPRCHFLLTSYTPFTNQ 279
Query: 610 PTHE-----QLSVAEITNACFEPANQMVKCDP 530
E + +V ++ P NQMV +P
Sbjct: 280 QVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/66 (30%), Positives = 26/66 (39%)
Frame = -1
Query: 554 QPDGEMRPPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 375
QP P + S VV P + RP++P P LS V PV+ V +
Sbjct: 531 QPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVP 590
Query: 374 HPPWCP 357
PP P
Sbjct: 591 QPPVAP 596
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 29.1 bits (62), Expect = 0.78
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 474 WVRRHHGTAYSKPCTCHDGGSHFTIWLAG 560
W R H Y+KPC DGG W G
Sbjct: 16 WRRDHPFGFYAKPCKSSDGGLDLMNWKVG 44
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = -3
Query: 687 QTNLVPYPRIHFPTGHVRASHLCREGLP----MNSFPSPRSQTHASSP 556
QTNL P P H SHL + +P +S PSP S P
Sbjct: 259 QTNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSSVPSPAPPRSVSQP 306
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 592 SVAEITNACFEPANQMVKCDPPSWQV 515
SV ++T ACFEP+ V P W +
Sbjct: 800 SVTKVTCACFEPSLDYVVVKIPRWDL 825
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 455 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 369
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 670 LPPYPLPHWSRTRQSSLPRRPTHEQLS 590
LPP PL SR++ SSL R T QL+
Sbjct: 316 LPPKPL---SRSKSSSLSRNQTRSQLN 339
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 458 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 363
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 695 PSSRLTWCLTPVSTSPLVTYAPVISA 618
PS+ T L P ++SP+ T AP +S+
Sbjct: 302 PSTIATSTLQPTTSSPITTSAPSLSS 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,051
Number of Sequences: 5004
Number of extensions: 71276
Number of successful extensions: 270
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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