Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K13
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.5  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   7.2  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    26   7.2  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   7.2  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   9.5  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.5  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 76   LRRTVSRSWISRKENYNRTL 17
            L+   S +W++R+ NY+RTL
Sbjct: 2107 LKSRSSEAWLNRRTNYSRTL 2126


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 494 FRTNLARCYNRYKNEIQSNISRLKVEFTPNRKHSI 390
           +RTN     N  K+   + + ++K+  +PNR H++
Sbjct: 3   YRTNNVPVGNETKSAALNALPKIKISDSPNRHHNL 37


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -2

Query: 124 VFTTIHYWYYFITNL*LR-----RTVSRSWISRKENYNRTLKKKKK 2
           +  T  +WYY +     +     R ++ +W + K+NY R +K +K+
Sbjct: 478 LIVTFRFWYYLMKAKSFQHKRDHRLLTIAWEAWKDNYQRRIKLQKE 523


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 114 VVKTP*IN*SSRHCHEKTLLCSVHSVL 194
           +VK+  +   ++HC +++LLCS  SV+
Sbjct: 8   IVKSGLVRNGAKHCTKRSLLCSNASVI 34


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 130 KSIKVAVIVMRKHFYVPSTLYCH*ALAIFQLC 225
           K +K +   ++  F    T +CH ++A+F LC
Sbjct: 590 KKLKQSAPKLQNIFTTLYTAWCHNSIAVFSLC 621


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 576 SVYVTTPLSPDGYVNRRVFK 517
           S+Y  TP  PDG+ ++R F+
Sbjct: 242 SIYKKTPEEPDGWPDKRCFE 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,484
Number of Sequences: 5004
Number of extensions: 70788
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)