Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K13
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam...    29   3.6  
At4g11730.1 68417.m01871 ATPase, plasma membrane-type, putative ...    28   8.3  

>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
           protein similar to iturin A synthetase C [Bacillus
           subtilis] GI:16040972; contains Pfam profile PF00501:
           AMP-binding enzyme
          Length = 1040

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 197 WQYRVDGT*KCFLMTMTATLIDLWC-FHDHTLLVLLY 90
           W+++  G  KC  +  T++ + +WC  HDHTL  L Y
Sbjct: 769 WKFQACGEIKCQPVVDTSSQL-IWCGSHDHTLYALDY 804


>At4g11730.1 68417.m01871 ATPase, plasma membrane-type, putative /
           proton pump, putative similar to plasma membrane-type
           ATPase SP|P20431 and SP|P19456 {Arabidopsis thaliana};
           contains InterPro accession IPR001757: ATPase, E1-E2
           type
          Length = 813

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 384 KHYMILVVKLTEYIVIKKLFIVILPKLNLSP 292
           KHY I  V +T  +V   +FI ++ K + SP
Sbjct: 555 KHYTIYAVSITIRVVFGFMFIALIWKFDFSP 585


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,455
Number of Sequences: 28952
Number of extensions: 355371
Number of successful extensions: 726
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)