Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K12
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    59   8e-10
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    28   1.3  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    28   1.3  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   5.4  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = -1

Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQY 603
           GEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQY 425



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = -3

Query: 777 GNSTRHSRSCSSAFSEQFTAMFRRKAFLHXYT 682
           GNST   +       +QF+AMFRRKAFLH YT
Sbjct: 369 GNSTS-IQEIFRRLGDQFSAMFRRKAFLHWYT 399


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQ 606
           GEGM+E EF+EA  ++  L  +Y++
Sbjct: 414 GEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQ 606
           GEGM+E EF+EA  ++  L  +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALERDYEE 434


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 427 SYYINTKSKSIVDLSKGERWKGG 495
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 57  SKTLIDLEKKKLYDIN*L---SLEKANNSSHWLQNEELKLHL 173
           SKTL DL+K+KL + N +   SL K  N S  LQ E+L   L
Sbjct: 152 SKTLTDLKKRKLVERNKIMYFSLRKGPNFS--LQIEKLNTDL 191


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 454 FCFSYLYSNFNSFRLQHA**NNLGSTR 374
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 354 VFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 265
           + TFP    D + QLWNV     L S +++
Sbjct: 72  ILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,775
Number of Sequences: 5004
Number of extensions: 48707
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)