Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K12
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 59 5e-09
03_01_0034 + 318432-318825,318902-319851 59 5e-09
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 59 5e-09
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 59 5e-09
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 58 1e-08
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 58 1e-08
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 58 1e-08
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 55 6e-08
02_05_1127 + 34292894-34293284,34293948-34295443 29 3.3
08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516... 29 4.3
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 29 5.7
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 29 5.7
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 29 5.7
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 29 5.7
12_01_0983 - 9979572-9980570,9980878-9981544,9982864-9983217,998... 28 9.9
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQY 603
GEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 580 GEGMDEMEFTEAESNMNDLVSEYQQY 605
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = -3
Query: 777 GNSTRHSRSCSSAFSEQFTAMFRRKAFLHXYT 682
GNST + SEQFTAMFRRKAFLH YT
Sbjct: 549 GNSTS-IQEMFRRVSEQFTAMFRRKAFLHWYT 579
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQY 603
GEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQY 425
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = -3
Query: 777 GNSTRHSRSCSSAFSEQFTAMFRRKAFLHXYT 682
GNST + SEQFTAMFRRKAFLH YT
Sbjct: 369 GNSTS-IQEMFRRVSEQFTAMFRRKAFLHWYT 399
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQY 603
GEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 421 GEGMDEMEFTEAESNMNDLVSEYQQY 446
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = -3
Query: 777 GNSTRHSRSCSSAFSEQFTAMFRRKAFLHXYT 682
GNST + SEQFTAMFRRKAFLH YT
Sbjct: 390 GNSTS-IQEMFRRVSEQFTAMFRRKAFLHWYT 420
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQY 603
GEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQY 425
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = -3
Query: 777 GNSTRHSRSCSSAFSEQFTAMFRRKAFLHXYT 682
GNST + SEQFTAMFRRKAFLH YT
Sbjct: 369 GNSTS-IQEMFRRVSEQFTAMFRRKAFLHWYT 399
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQY 603
GEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 400 GEGMDEMEFTEAESNMNDLVAEYQQY 425
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = -3
Query: 777 GNSTRHSRSCSSAFSEQFTAMFRRKAFLHXYT 682
GNST + SEQFTAMFRRKAFLH YT
Sbjct: 369 GNSTS-IQEMFRRVSEQFTAMFRRKAFLHWYT 399
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQY 603
GEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 400 GEGMDEMEFTEAESNMNDLVAEYQQY 425
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = -3
Query: 777 GNSTRHSRSCSSAFSEQFTAMFRRKAFLHXYT 682
GNST + SEQFTAMFRRKAFLH YT
Sbjct: 369 GNSTS-IQEMFRRVSEQFTAMFRRKAFLHWYT 399
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQY 603
GEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 400 GEGMDEMEFTEAESNMNDLVAEYQQY 425
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = -3
Query: 777 GNSTRHSRSCSSAFSEQFTAMFRRKAFLHXYT 682
GNST + SEQFTAMFRRKAFLH YT
Sbjct: 369 GNSTS-IQEMFRRVSEQFTAMFRRKAFLHWYT 399
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 55.2 bits (127), Expect = 6e-08
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = -1
Query: 677 EGMDEMEFTEAESNMNDLVSEYQQY 603
EGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 417 EGMDEMEFTEAESNMNDLVAEYQQY 441
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = -3
Query: 777 GNSTRHSRSCSSAFSEQFTAMFRRKAFLHXYT 682
GNST + SEQFTAMFRRKAFLH YT
Sbjct: 385 GNSTS-IQEMFRRVSEQFTAMFRRKAFLHWYT 415
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 566 RQTLRPRRRWPPGTVGTRRQG 628
R T +P+RRWPPG+ G +G
Sbjct: 83 RATGQPKRRWPPGSSGGGARG 103
>08_02_1050 +
23949828-23949981,23950083-23950534,23951599-23951631,
23952069-23952179,23953175-23953348
Length = 307
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 548 SPAPAPRQTLRPRRRWPP 601
SP+P+P + P RRWPP
Sbjct: 27 SPSPSPLLSRAPSRRWPP 44
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQ 606
GEGM+E EF+EA ++ L +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEE 434
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQ 606
GEGM+E EF+EA ++ L +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEE 434
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQ 606
GEGM+E EF+EA ++ L +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEE 434
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 680 GEGMDEMEFTEAESNMNDLVSEYQQ 606
GEGM+E EF+EA ++ L +Y++
Sbjct: 491 GEGMEEGEFSEAREDLAALEKDYEE 515
>12_01_0983 -
9979572-9980570,9980878-9981544,9982864-9983217,
9983334-9983668
Length = 784
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 707 RLNIAVNCSENALEQLLEWRVELPNEGG 790
+L + C +N + L+++ VELPNE G
Sbjct: 486 KLPSTIGCLKNLVRLLVDYNVELPNEIG 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,301,015
Number of Sequences: 37544
Number of extensions: 324116
Number of successful extensions: 851
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -