Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K12
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 788 PLHSVTPPAIPGAVQAHFRNSLPLCSGARLSCIXTPGEGMDEME 657
           P+   + P I G+ +  +  S+ LC   RL     PG  + + +
Sbjct: 170 PMDRQSCPLILGSCKCIYVQSINLCMAGRLFGYLCPGMALSQFD 213


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 498 ITPFPSLAFREIHNTFAFRIYIVTSI 421
           + PFP+ AFR+  ++ A+R     S+
Sbjct: 89  LLPFPAAAFRQDVHSAAYRCVASNSV 114


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 498 ITPFPSLAFREIHNTFAFRIYIVTSI 421
           + PFP+ AFR+  ++ A+R     S+
Sbjct: 89  LLPFPAAAFRQDVHSAAYRCVASNSV 114


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 625 RSFMLLSASVNSISSMPSPG 684
           R+F LL A  NS++ + S G
Sbjct: 116 RNFNLLRADANSVNELESQG 135


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 445 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 341
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 445 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 341
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 445 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 341
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 445 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 341
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,967
Number of Sequences: 438
Number of extensions: 3640
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)