Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K11
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 180 2e-46
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 32 0.12
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 29 0.63
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 29 1.1
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 2.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.4
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 7.8
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 7.8
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 26 7.8
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 7.8
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 180 bits (439), Expect = 2e-46
Identities = 77/118 (65%), Positives = 103/118 (87%)
Frame = -1
Query: 693 NXXDETYLRRVIKPLEXLLIAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIV 514
N DE+YLRRVI+PLE LL+ +KRI +KDSAVNA+CYGAK+++PG+LRYE GIEV++EIV
Sbjct: 250 NTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIV 309
Query: 513 IVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKIL 340
++TTKGEA+A+ +A M+T +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK L
Sbjct: 310 LITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTL 367
Score = 52.4 bits (120), Expect = 8e-08
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -2
Query: 353 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYN 255
+KK+ +GKLDKYG+PNENTP +W SY++Y+
Sbjct: 363 KKKTLKKEGKLDKYGRPNENTPADWSKSYIDYS 395
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 731 TMHDIXDAQWSYETXK 684
TMHD+ DAQW Y+ +
Sbjct: 237 TMHDVLDAQWIYDNTR 252
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = -2
Query: 326 KLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVKEGSRKRTASTANAEDPDVSIEVKQ 147
K D E++ +E +S + + ++E E+ + E +K+ + A +ED + E +
Sbjct: 32 KQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKK--AVAASEDSESDSESSE 89
Query: 146 EXXXXXXKRDSEAPAEADATMDT---SESPETAEQPADDSVR 30
E + DSE E+++ ++ SE +E+ +D+S R
Sbjct: 90 EEEETESEEDSEVSDESESESESESESEEESESEEESDESER 131
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 29.5 bits (63), Expect = 0.63
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = -2
Query: 362 KLHRKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVKEGSRKR 201
+L + + QG+LD + KP ++PK+ +++ + K++ ++ G E +KR
Sbjct: 328 RLEKASKTIPQGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKG-GESKKKR 380
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 28.7 bits (61), Expect = 1.1
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -2
Query: 386 PENGVSDRKLHRKKS-SYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVKEGS 210
P GV +L K+S SY K + + PK + N+ N+KK +GD +
Sbjct: 244 PAIGVLIPRLIMKESKSYENSKALNSAEGKD--PKAFFNTDDEDNMKKSSSHGDSEVVEA 301
Query: 209 RKRTASTANAEDPDVSIEVKQ 147
R A+ A+A D +V KQ
Sbjct: 302 SDRYANQADAADAEVDNIEKQ 322
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.5
Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Frame = -2
Query: 365 RKLHRKKSSYXQGKLDKYGKP--NENTPKEWLNSYVNYNV-------KKEPENGDGVKEG 213
+ L K +D+YG+P + KE Y N E + + V
Sbjct: 51 KSLKEDKDFKTTASVDRYGRPLNQDKATKEIDRLYELENEGSSSSSESSEITDNEEVASA 110
Query: 212 SRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAE 54
S K T S ++ EV SE+ E+DA +T PE +E
Sbjct: 111 SSKSTKSEELTDEESEDEEVYDPARGEGIISTSESSDESDAESETEAQPEISE 163
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = -2
Query: 239 ENGDGVKEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 60
E + V++ K+ S+ ++ D + S + E DSE+ + ++ P +
Sbjct: 186 EEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245
Query: 59 AEQPA 45
E+PA
Sbjct: 246 EERPA 250
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 395 SRSIMTRFSFAATP*SH-EAIVDVVIRATANATASPLVVTITISWSTSMPS--SYLKIPG 565
S +T S +T ++ + VD+ TA++T T+S+ST +P+ S L P
Sbjct: 213 SSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPA 272
Query: 566 NS 571
+S
Sbjct: 273 SS 274
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 275 NSYVNYNVKKEPENGDGVKEGSRKRTASTANAEDPDV 165
N YV+ N E +GD + E R R + ++ D+
Sbjct: 3 NEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERDM 39
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 292 VFSFGLPYLSSFPXLYEDFFL*SFRSETPFSG 387
+FSFGL LSS + D SF S+T SG
Sbjct: 134 LFSFGLMVLSSIVAAWADIQSSSFASQTLNSG 165
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -2
Query: 254 VKKEPENGDG-----VKEGSRKRTASTANAEDPDVSIEVKQE 144
++ +P + DG VKE + +S++N E S+EVK E
Sbjct: 290 IETQPASHDGEVDGEVKEEEENKVSSSSNIEASQSSLEVKDE 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,181
Number of Sequences: 5004
Number of extensions: 52912
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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