Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K11
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 180 1e-45
03_03_0094 + 14378953-14380728 179 3e-45
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 3.5
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 29 3.5
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 29 4.7
08_02_1013 + 23554996-23555139,23555456-23555541,23556375-235563... 29 4.7
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 29 4.7
12_01_0400 + 3169597-3170504,3170510-3171269 29 6.2
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 29 6.2
>07_03_1408 - 26353389-26355191
Length = 600
Score = 180 bits (439), Expect = 1e-45
Identities = 80/148 (54%), Positives = 112/148 (75%)
Frame = -1
Query: 780 RXQTSXVXIQGEKKAXHDARHXRRTMVI*NXXDETYLRRVIKPLEXLLIAHKRIFIKDSA 601
R ++ + Q HD R M N DETYLRR++ PLE LL ++KR+ +KDSA
Sbjct: 262 RVRSGILGEQDNMVTMHDVMDARWAMD--NYNDETYLRRIVMPLEVLLTSYKRLVVKDSA 319
Query: 600 VNAVCYGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVALAVALMTTSTMASCDHGVAAK 421
VNA+CYGAK+++PG+LR+E+ I+V +E+V++TTKGEA+A+ +A MTT+ MA+CDHG AK
Sbjct: 320 VNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMTTAVMATCDHGAVAK 379
Query: 420 LKRVIMERDTYPRKWGLGPKASQKKILI 337
+KRV+M+RDTYPRKWGLGP A +KK ++
Sbjct: 380 IKRVVMDRDTYPRKWGLGPVALKKKKMV 407
Score = 42.3 bits (95), Expect = 5e-04
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = -2
Query: 353 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDG-VKEGSRKRTASTANAE 177
+KK +G LDK+GKPNE TP EW+ NV P GD + + + AE
Sbjct: 402 KKKKMVAEGLLDKHGKPNEKTPAEWIR-----NVAL-PTGGDAMIASIAAAPEEAKVKAE 455
Query: 176 DPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAEQP 48
V+ E +E +D E A+ + +A P
Sbjct: 456 QDVVATEEVKEKKKKKKHKDEEDAADEGRKRKIEDDDASASVP 498
>03_03_0094 + 14378953-14380728
Length = 591
Score = 179 bits (435), Expect = 3e-45
Identities = 78/132 (59%), Positives = 107/132 (81%)
Frame = -1
Query: 732 HDARHXRRTMVI*NXXDETYLRRVIKPLEXLLIAHKRIFIKDSAVNAVCYGAKVLLPGIL 553
HD R M N DE+YLRR++ PLE LL ++KR+ +KDSAVNA+CYGAK+++PG+L
Sbjct: 282 HDVMDARWAMD--NFNDESYLRRIVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLL 339
Query: 552 RYEDGIEVDQEIVIVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWG 373
R+E+ IEV +E+V++TTKGEA+A+ +A MTT+ MA+CDHG AK+KRV+M+RDTYPRKWG
Sbjct: 340 RFENEIEVGEEVVLMTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWG 399
Query: 372 LGPKASQKKILI 337
LGP A +KK ++
Sbjct: 400 LGPVALKKKKMV 411
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 353 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVKEG--SRKRTASTANA 180
+KK +G LDK+GKPNE TP EWL + V P GD + G +
Sbjct: 406 KKKKMVAEGLLDKHGKPNEKTPSEWLRNAV------LPAGGDAMIAGIAAAPEPEKPKVK 459
Query: 179 EDPDVSIEVKQE 144
E+ DV+ E K++
Sbjct: 460 EEADVAEETKEK 471
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 248 KEPENGDGVKEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTS-E 72
K PE+ ++ S K A T EDP V++E + E + S P + +A ++ E
Sbjct: 1164 KLPEDSTTFEKPSEKDDAGTKQTEDP-VTLEKEPE-----EDKGSVEPTQDNAGLEKPLE 1217
Query: 71 SPETAEQPADDSV 33
E + +P++DSV
Sbjct: 1218 EDEASAKPSEDSV 1230
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -2
Query: 203 RTASTANAEDPDVSIEVKQEXXXXXXKRDSEA-PAEADATMD--TSESPETAEQPADDSV 33
RTASTA A P + IE +Q KR EA P E D ++ +S + + +SV
Sbjct: 112 RTASTATAGQPKLDIEDEQSEDQKQNKRKKEASPEECDQAVEGLSSAKAKAKAKQVQESV 171
Query: 32 R 30
+
Sbjct: 172 K 172
>12_01_0433 -
3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = -2
Query: 236 NGDGVKEGSRKRTA---STANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSE-- 72
NG G K G R+RT+ S ++ + VS K SE P ++T D +
Sbjct: 707 NGGGFKLGKRRRTSMEMSCSSGNNTKVSDRQKSRKQQKVQTPASEGPCAKESTTDALQEI 766
Query: 71 -SPETAEQPADDSV 33
S E + ADD V
Sbjct: 767 ISFEESNADADDMV 780
>08_02_1013 +
23554996-23555139,23555456-23555541,23556375-23556399,
23556655-23556711,23556795-23556852,23557767-23558614,
23558862-23558921
Length = 425
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = -3
Query: 421 TEACHNGTRHVPQKMGSRTESFTEKNPHTXKGNLTNMANQMRTHQKNG*TVTSTIMLRKN 242
TE N K + + E G T + HQ+ G T T+ + RK
Sbjct: 116 TEEAGNLKAKTSSKKVRKQKGLKESPASEHMGEDTKDQHSAEQHQELGYTATTGVATRKG 175
Query: 241 RRTVTVSRKAAESERQAQLTRK 176
RRT +R+ + ++ + Q + K
Sbjct: 176 RRTREGARQLSPTDGEDQASGK 197
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 29.1 bits (62), Expect = 4.7
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Frame = -2
Query: 341 SYXQGKLDKYGKPN-----ENTPKEWLNSYVNYNVKKEPENGDGVK-EGSRKRTASTANA 180
S +GK K GK N E V V E VK + K+ S+++
Sbjct: 18 SVSEGKSGKKGKRNAEDEIEKAVSAKKQKTVREKVVPSKEEAKKVKKQPPPKKVESSSSE 77
Query: 179 EDPDVSIE-VKQEXXXXXXKRDSEAPAEADATMDTSESPETAEQPADDSV 33
ED S E VK + + + PA+ +++ D+S+ + ++PA V
Sbjct: 78 EDSSESEEEVKAQPKKTVQPKKAAQPAKEESSDDSSDDSSSDDEPAKKPV 127
>12_01_0400 + 3169597-3170504,3170510-3171269
Length = 555
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 353 CEAFGPRPHFLGYVSRSIMTRFSFAATP 436
CEA P H Y +R + R S AATP
Sbjct: 212 CEATSPVDHLAYYFARGLKLRISGAATP 239
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = -2
Query: 251 KKEPENGDGVKEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSE 72
++EP+ + KE K + A A P+ E + + E AEA A E
Sbjct: 137 EEEPKAEEPAKEEEPKAEVAAAAAAPPEAGTEEPKAEASSEEAKTEEPKAEAAADEPAKE 196
Query: 71 SPETAEQPADDS 36
+ PA+++
Sbjct: 197 ESKAEAAPAEEA 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,685,752
Number of Sequences: 37544
Number of extensions: 349359
Number of successful extensions: 1002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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