Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K11
(849 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 183 1e-46
At3g19750.1 68416.m02500 hypothetical protein 35 0.059
At4g31100.1 68417.m04414 wall-associated kinase, putative 30 2.2
At4g31610.1 68417.m04490 transcriptional factor B3 family protei... 29 3.9
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 3.9
At5g42750.1 68418.m05206 expressed protein 28 6.8
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At1g14540.1 68414.m01727 anionic peroxidase, putative similar to... 28 6.8
At5g58360.1 68418.m07307 ovate family protein 69% similar to ova... 28 9.0
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 28 9.0
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 28 9.0
At5g09930.1 68418.m01148 ABC transporter family protein 28 9.0
At4g27460.1 68417.m03946 CBS domain-containing protein 28 9.0
At2g46550.1 68415.m05807 expressed protein 28 9.0
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 28 9.0
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 183 bits (446), Expect = 1e-46
Identities = 79/119 (66%), Positives = 104/119 (87%)
Frame = -1
Query: 693 NXXDETYLRRVIKPLEXLLIAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIV 514
N DE+YLRRVI PLE +L ++KR+ +KDSAVNA+CYGAK+++PG+LR+E+ I+V E+V
Sbjct: 266 NSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVV 325
Query: 513 IVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKILI 337
++TTKGEA+A+ +A MTTS MA+CDHGV AK+KRV+M+RDTYPRKWGLGP+AS KK LI
Sbjct: 326 LMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLI 384
Score = 44.4 bits (100), Expect = 1e-04
Identities = 32/107 (29%), Positives = 46/107 (42%)
Frame = -2
Query: 350 KKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVKEGSRKRTASTANAEDP 171
KK GKLDK+GKPNE TP EW + V P GD + G + A E+
Sbjct: 380 KKKLIADGKLDKHGKPNEKTPVEWSRNVV------LPTGGDAIIAG------AAAAPEEI 427
Query: 170 DVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAEQPADDSVR 30
E + K D + + A T S++ E + A++ V+
Sbjct: 428 KADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKEVEGEEAEEKVK 474
>At3g19750.1 68416.m02500 hypothetical protein
Length = 378
Score = 35.1 bits (77), Expect = 0.059
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 383 ENGVSDRKLHRKKSSYXQGKLDKYGKPNENTPKEWLNS 270
ENGV D K ++KS+ G LD + + E EWLN+
Sbjct: 101 ENGVDDGKTGKEKSNNGVGHLDSHAQLGEQDQIEWLNN 138
>At4g31100.1 68417.m04414 wall-associated kinase, putative
Length = 786
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -1
Query: 546 EDGIEVDQEIVIVTTKGEAVALAVALMTTSTMAS 445
EDG+E ++E+V + +G++ ++ V +S +AS
Sbjct: 738 EDGVEEEEEVVTIVHRGDSWSIGVTAPASSIVAS 771
>At4g31610.1 68417.m04490 transcriptional factor B3 family protein /
reproductive meristem protein 1 (REM1) similar to
reproductive meristem gene 1 from [Brassica oleracea
var. botrytis] GI:3170424; contains Pfam profile
PF02362: B3 DNA binding domain; identical to cDNA
reproductive meristem protein 1 (REM1) GI:13604226
Length = 517
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 332 QGKLDKYGK-PNENTPKEWLNSYVNYNVKKEPENGDGVKEGSRKRTAS 192
QG L K+ NE P WL + N +KE D V +G K+T S
Sbjct: 236 QGDLCKFKLFQNEERPVLWLCPQESGNGRKEKRTFDEVSKGKEKKTPS 283
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Frame = -2
Query: 332 QGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVKEGSRKR--TASTANAEDPDVSI 159
+ K+ KYG T + +N Y N K + D G R+R S AED D +
Sbjct: 1076 KAKVSKYGDQLLETIETTVNEYYGTNKKDSIISNDSPDSGKRRRDENISPNVAEDDDFEV 1135
Query: 158 EVKQEXXXXXXKRDSE 111
Q + +E
Sbjct: 1136 SPSQSCKKTVRNKSNE 1151
>At5g42750.1 68418.m05206 expressed protein
Length = 337
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 721 TS*THNGHMKPXRRDLPSSSNQTSGXPPDCSQKDIYQXXXXXXXXXXX*SAVTRYFKI 548
TS T++GH++ L SSS TS D + +++ SAV R K+
Sbjct: 277 TSPTNSGHLRVSTAGLSSSSGSTSSSSSDSTMEELQAAIQAAIAHCKNSSAVDRDDKV 334
>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 195
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 293 CSHLVCHICQVSLXCMRIFF 352
CSH C IC SL M+++F
Sbjct: 122 CSHYTCPICSKSLGDMQVYF 141
>At1g14540.1 68414.m01727 anionic peroxidase, putative similar to
lignin forming anionic peroxidase [Nicotiana sylvestris]
SWISS-PROT: Q02200
Length = 315
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 463 GHQSNGQRYCLTFSGDYYDFLVNFDAVFVS 552
G + GQ CLTF G YD + DA F S
Sbjct: 186 GAHTLGQAQCLTFKGRLYDNSSDIDAGFSS 215
>At5g58360.1 68418.m07307 ovate family protein 69% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 296
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/74 (22%), Positives = 30/74 (40%)
Frame = -3
Query: 385 QKMGSRTESFTEKNPHTXKGNLTNMANQMRTHQKNG*TVTSTIMLRKNRRTVTVSRKAAE 206
QKMG+ F++ PH+ L M+ R H + S+ +R+ R+ +
Sbjct: 3 QKMGTHKFRFSDMMPHSWLYKLKGMSRSSRKHHLSSPKHLSSADASSSRKLRDPLRRLSS 62
Query: 205 SERQAQLTRKIPMS 164
+ Q + P S
Sbjct: 63 TAHHPQASNSPPKS 76
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -2
Query: 221 KEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAEQPAD 42
K+ RKR ST AED VS ++K++ D ++DA + A+ A
Sbjct: 375 KKTKRKRVTSTIMAEDLPVSDDIKRD--DSDTMADDIERDDSDAVEYYTACESMADDTAS 432
Query: 41 DSV 33
DSV
Sbjct: 433 DSV 435
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 27.9 bits (59), Expect = 9.0
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = -3
Query: 484 VGRCSDDHVYDGLMRSWCSRETEACHNGTRHVPQKMGSRTESFTEKNPHTXKGNLTNMAN 305
+G CS D +YD LM + R T+ V G + S T ++ N AN
Sbjct: 333 LGVCSSDLIYDFLM-TLGKRLTKVDAFTITTVLDCCGMKIRSDDPLAMKTFIISIQNKAN 391
Query: 304 QMRTHQKNG*TVTSTIMLRKNRRTVTV--SRKAAESERQAQLTR 179
+++T +G T + +M+ K T++ + K E Q TR
Sbjct: 392 ELKT-SSDGQTQMNNMMMEKMLETISAIKNNKLRAKEDSVQNTR 434
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 651 LEXLLIAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVAL 481
LE LL +++ K S A + V L I + +GI V +++ KGE V L
Sbjct: 58 LESLLSTDRKLISKQSNNGASSISSGVRLENISKSYEGITVLKDVTWEVKKGEKVGL 114
>At4g27460.1 68417.m03946 CBS domain-containing protein
Length = 391
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 472 SNGQRYCLTFSGDYYDFLVNFDAVF 546
SNGQR+C D FL+ F A F
Sbjct: 151 SNGQRFCWITQEDIIQFLLGFIAAF 175
>At2g46550.1 68415.m05807 expressed protein
Length = 397
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 106 LPKQTPLWTHRSHQKQQNNQQ 44
LP T LW+H HQ Q N +Q
Sbjct: 81 LPHNTRLWSHPHHQFQVNKKQ 101
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 293 CSHLVCHICQVSLXCMRIFF 352
CSH C +C SL M+++F
Sbjct: 182 CSHYTCPVCSKSLGDMQVYF 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,440
Number of Sequences: 28952
Number of extensions: 286023
Number of successful extensions: 766
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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