Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K10
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    64   3e-11
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    63   4e-11
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy...    27   3.2  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
 Frame = -3

Query: 582 TQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIR 406
           T+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV R
Sbjct: 253 TKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKR 312

Query: 405 A-TRKLNPLTN 376
           A  +K NPL N
Sbjct: 313 AHVQKKNPLKN 323



 Score = 33.9 bits (74), Expect = 0.028
 Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
 Frame = -1

Query: 632 DLLKLAPGGHFGRFVI*LSPHSAGLTPYSGHGRHHQNKRRTSTCPNR--RWPTLTSHVFS 459
           +LL+LAPGGH GRFVI        L    G        ++    P        +T  + S
Sbjct: 236 NLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINS 295

Query: 458 SLMRSGRSSVLPTNA*SVLHAN*TRSLTTKAML-KLNPYAAVLKRKAILELRRRKNLKAL 282
             ++S   +  P+      H      L  KA+L +LNPYA     KA ++L   K  KA 
Sbjct: 296 DEIQSIVKAAGPSRV-KRAHVQKKNPLKNKAVLARLNPYAKAY--KANVKLNTGKTPKAA 352

Query: 281 AD 276
            +
Sbjct: 353 GE 354


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
 Frame = -3

Query: 582 TQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIR 406
           T+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV R
Sbjct: 253 TKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKR 312

Query: 405 A-TRKLNPLTN 376
           A  +K NPL N
Sbjct: 313 AHVQKKNPLKN 323



 Score = 33.5 bits (73), Expect = 0.037
 Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
 Frame = -1

Query: 632 DLLKLAPGGHFGRFVI*LSPHSAGLTPYSGHGRHHQNKRRTSTCPNR--RWPTLTSHVFS 459
           +LL+LAPGGH GRFVI        L    G        ++    P        +T  + S
Sbjct: 236 NLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINS 295

Query: 458 SLMRSGRSSVLPTNA*SVLHAN*TRSLTTKAML-KLNPYAAVLKRKAILELRRRKNLKAL 282
             ++S   +  P+      H      L  KA+L +LNPYA     KA +++   K  KA 
Sbjct: 296 DEIQSIVKAAGPSRV-KRAHVQKKNPLKNKAVLSRLNPYAKAY--KANVKINSEKTPKAA 352

Query: 281 AD 276
            +
Sbjct: 353 GE 354


>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 152

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 610 EVILDVSSSDSVRIRQA*PLIRVMEDTIKTKEELQPAPTEDGQH*PHTSS 461
           E++  + S    R+  +   ++  ED++KTK ELQ A  +  ++ P TS+
Sbjct: 65  EIVKPILSKAFQRLEDSISSLQRQEDSLKTKYELQEARLDMLKNRPATSA 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,313
Number of Sequences: 5004
Number of extensions: 42072
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)