Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K10
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                34   0.12 
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)             29   4.6  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -1

Query: 365 MLKLNPYAAVLKRKAILELRRRKNLKALADAEKSG 261
           ML+LNPYA   KR  +L + RR+  K  A A+K G
Sbjct: 264 MLRLNPYAKSAKRAEMLTVERRRAAKEAALAKKRG 298


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = -3

Query: 534 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 388
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = -3

Query: 459  KSDEIRKVLRAPNKRVIRATRKLNPLTNNQGDAETQSLRGRAEEESYLRAAQKEELEGSC 280
            K  EI + L+   K VIR  R+ +     + D E +    + EE   +   ++EELE   
Sbjct: 1531 KELEIERQLKIKEKEVIRLQRERDEERRRREDEEKRIQMEKVEELKRIEREKEEELERQM 1590

Query: 279  *CREEWIE 256
              +EE +E
Sbjct: 1591 REKEEEME 1598


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 489 MANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNQGDAETQSL 346
           +AN D +  +K+    K + AP KR++R T   N + +   D  +  +
Sbjct: 747 LANEDKSLNVKATRRSKPIAAPRKRILRKTSSRNKIVHGATDGNSSKV 794


>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
          Length = 1425

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 510  FNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNQGDAETQSLRGRAE 331
            FN+  P   N   T ++  ++     R   KRV    +K   L  +  D  +Q+ RG  E
Sbjct: 1277 FNVMHPLTGNAKCTTIMVGEKDSSTYRKKRKRVFYGKQK-QELNRSDRDESSQTTRGLDE 1335

Query: 330  E 328
            E
Sbjct: 1336 E 1336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,987,744
Number of Sequences: 59808
Number of extensions: 338307
Number of successful extensions: 1231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)