BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_K10 (827 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 59 3e-09 Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 29 3.1 Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 29 3.1 U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical pr... 29 3.1 Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr... 29 5.4 >AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal protein, large subunitprotein 4 protein. Length = 345 Score = 59.3 bits (137), Expect = 3e-09 Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Frame = -3 Query: 582 TQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR 406 T+SAF +LD ++G+ S Q KK +++P P MAN+D +R+++S+E+ K +RAP K + Sbjct: 252 TESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVL 311 Query: 405 ATRKLNPL 382 NPL Sbjct: 312 PKVHRNPL 319 Score = 36.7 bits (81), Expect = 0.020 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Frame = -1 Query: 632 DLLKLAPGGHFGRFVI*LSPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSL 453 +LLKLAPGGH GR +I SA + +G N + + P + + FS + Sbjct: 235 NLLKLAPGGHLGRLII--WTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRI 292 Query: 452 MRSGR--SSVLPTNA*SVLHAN*TRSLTTKAML-KLNPYAAVLKRKAILELRR 303 +RS ++ VL L + +L KLNPYA++L++ + +++ Sbjct: 293 IRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRKASKANVKK 345 >Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical protein W08E3.2 protein. Length = 584 Score = 29.5 bits (63), Expect = 3.1 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Frame = -3 Query: 534 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNQGD 364 TP + + + P P+ ++D ++ + + R+V +V ++ P+ + + Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226 Query: 363 AETQSLRGRAEEESYLRAAQKEELE 289 +G EE+ +R AQK +++ Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251 >Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical protein W08E3.2 protein. Length = 584 Score = 29.5 bits (63), Expect = 3.1 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Frame = -3 Query: 534 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNQGD 364 TP + + + P P+ ++D ++ + + R+V +V ++ P+ + + Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226 Query: 363 AETQSLRGRAEEESYLRAAQKEELE 289 +G EE+ +R AQK +++ Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251 >U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical protein K04G7.1 protein. Length = 558 Score = 29.5 bits (63), Expect = 3.1 Identities = 19/62 (30%), Positives = 32/62 (51%) Frame = -1 Query: 383 SLTTKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 204 S ++ + K+N +K LE+R + + + D E SG +LS P A L++RR Sbjct: 352 STSSASPQKMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRR 410 Query: 203 RK 198 R+ Sbjct: 411 RE 412 >Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical protein F10F2.2 protein. Length = 1343 Score = 28.7 bits (61), Expect = 5.4 Identities = 15/58 (25%), Positives = 30/58 (51%) Frame = -3 Query: 462 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNQGDAETQSLRGRAEEESYLRAAQKEELE 289 + DE+RK AP+++V++ + + G A + S++G E + A Q+ + E Sbjct: 425 IDKDEVRKEPCAPHQKVVKIGGPVYRIGVGGGAASSVSVQGNRENQLDFAAVQRGDAE 482 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,057,254 Number of Sequences: 27780 Number of extensions: 249893 Number of successful extensions: 703 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 652 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 701 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 2050970610 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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