Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K10
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    59   3e-09
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
 Frame = -3

Query: 582 TQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR 406
           T+SAF +LD ++G+    S Q KK +++P P MAN+D +R+++S+E+ K +RAP K  + 
Sbjct: 252 TESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVL 311

Query: 405 ATRKLNPL 382
                NPL
Sbjct: 312 PKVHRNPL 319



 Score = 36.7 bits (81), Expect = 0.020
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
 Frame = -1

Query: 632 DLLKLAPGGHFGRFVI*LSPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSL 453
           +LLKLAPGGH GR +I     SA     + +G    N  +     +   P + +  FS +
Sbjct: 235 NLLKLAPGGHLGRLII--WTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRI 292

Query: 452 MRSGR--SSVLPTNA*SVLHAN*TRSLTTKAML-KLNPYAAVLKRKAILELRR 303
           +RS     ++       VL       L  + +L KLNPYA++L++ +   +++
Sbjct: 293 IRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRKASKANVKK 345


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -3

Query: 534 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNQGD 364
           TP +  +  + P P+     ++D  ++ +  + R+V      +V ++     P+   + +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226

Query: 363 AETQSLRGRAEEESYLRAAQKEELE 289
                 +G  EE+  +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -3

Query: 534 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNQGD 364
           TP +  +  + P P+     ++D  ++ +  + R+V      +V ++     P+   + +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226

Query: 363 AETQSLRGRAEEESYLRAAQKEELE 289
                 +G  EE+  +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251


>U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical
           protein K04G7.1 protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -1

Query: 383 SLTTKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 204
           S ++ +  K+N       +K  LE+R  +  + + D E SG +LS   P   A  L++RR
Sbjct: 352 STSSASPQKMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRR 410

Query: 203 RK 198
           R+
Sbjct: 411 RE 412


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical
           protein F10F2.2 protein.
          Length = 1343

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -3

Query: 462 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNQGDAETQSLRGRAEEESYLRAAQKEELE 289
           +  DE+RK   AP+++V++    +  +    G A + S++G  E +    A Q+ + E
Sbjct: 425 IDKDEVRKEPCAPHQKVVKIGGPVYRIGVGGGAASSVSVQGNRENQLDFAAVQRGDAE 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,057,254
Number of Sequences: 27780
Number of extensions: 249893
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)