Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K09
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    27   0.23 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.70 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   1.2  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   8.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
            protein.
          Length = 947

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = +2

Query: 380  CYDTDPRTVCCRRLQHAT*RRI*RILFLKVLMTQSGVTISYTVLCYCTNS--RRRGASC 550
            C   + +  C R    AT  ++ R+     L   SG T +  V C C  S   RR   C
Sbjct: 876  CKCENGKPTCWRECDKATCEKLFRMKKSSALRPASGGTTARVVRCVCAGSTGTRRATGC 934


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 25  SYYLLDQVKEECDMSRRFLVTQYNAVVLRRGDDAAGSIKSKPL 153
           SYY LD + E+     R     ++   + R DD A    SK L
Sbjct: 116 SYYSLDDLSEDTFYDIRLWGVSFSKKQILRSDDLAVKTTSKSL 158


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 442 NLKDIISEGINDAIRRDDILHSTM 513
           N KD+  + +ND  R+DD+L + M
Sbjct: 192 NGKDLDDDDMNDDDRKDDLLGNNM 215


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 381 VTIRIREQFAAGGYSTPHSVEFKG 452
           V + + E +   GY TP S+ ++G
Sbjct: 32  VRLLVTEGWDEEGYHTPESLHYEG 55


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 232 DGRAPPGAATEAPPLNTARLH 294
           +G   PG   E PP N   +H
Sbjct: 92  NGEWVPGGKAEVPPSNPIYIH 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,456
Number of Sequences: 336
Number of extensions: 2939
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)