Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K09
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39973| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_4098| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_39973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 521 YNSIVLCK-ISSRLIASLIPSEIISFKFDAMWRAVAACSKLFADPYRNKTMFCSFLLNNT 345
           Y+S +  K I  R + +  P+E  S  FDA+   V AC KL A P  N   F +     T
Sbjct: 8   YHSYIKSKQIIPRCLKNFEPTEEFSDDFDALPSKVYACEKL-AAPKSNSADFMNVCFKVT 66

Query: 344 N 342
           N
Sbjct: 67  N 67


>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 467  PSEIISFKFDAMWRAVAACSKLF 399
            PSE  SF +DA+W    A  KLF
Sbjct: 1366 PSEYASFAYDAVWAYALALDKLF 1388


>SB_4098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 467 PSEIISFKFDAMWRAVAACSKLF 399
           PSE  SF +DA+W    A  KLF
Sbjct: 73  PSEYASFAYDAVWAYALALDKLF 95


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 400 NSLLQAATARHIASNLKDIISEGINDAIRRDDILHS 507
           N L+    A H    +   I EGIND I RDD L S
Sbjct: 707 NILVPKEKAEHALVEVLPPIDEGINDNILRDDELDS 742


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,099,980
Number of Sequences: 59808
Number of extensions: 365827
Number of successful extensions: 826
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)