Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K09
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016425-12|AAB65336.1|  190|Caenorhabditis elegans Histone h1 l...    32   0.55 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    31   1.3  

>AF016425-12|AAB65336.1|  190|Caenorhabditis elegans Histone h1 like
           protein 6 protein.
          Length = 190

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 22/78 (28%), Positives = 37/78 (47%)
 Frame = +1

Query: 238 RAPPGAATEAPPLNTARLHSPL*LKLNDYIQT*LLXVLFNKNEQNIVLLRYGSANSLLQA 417
           +AP   AT+ P + TA  H P    +N  +   +  +   K    I +L+Y +AN  L  
Sbjct: 17  KAPKANATKVPKVKTAAAHPPF---IN-MVTAAISSLKERKGSSKIAILKYITANYKL-G 71

Query: 418 ATARHIASNLKDIISEGI 471
              + I SNL+  + +G+
Sbjct: 72  DQVKKINSNLRSALKKGV 89


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = +1

Query: 232  DGRAPPGAATEAPPLNTARLHSPL*LKLNDYIQT*LLXVLFNKNEQNIVLLR----YGSA 399
            DG     + T+   L+T   H P+   +N Y    +L +L N  +  I+ L      G  
Sbjct: 1440 DGWVETWSTTKGRLLSTFNAHRPIKKLINSYESHRMLLLLENCAQLPILCLHNTPAVGVE 1499

Query: 400  NSLLQAATARHIASNLKDIISEGINDAIRRDDILHSTMLLYKQSPPRCLLP 552
             +  ++A A+ ++S   + ++      I++D IL S      QS PR   P
Sbjct: 1500 ATRRRSARAQSVSSASNEPVASTSAGEIKKDPILSSNNGGNAQSAPRATAP 1550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,258
Number of Sequences: 27780
Number of extensions: 264279
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)