Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K08
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   5e-30
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            39   0.004
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           37   0.022
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)                 29   3.3  
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)                    29   4.3  
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)                   28   7.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (309), Expect = 5e-30
 Identities = 62/109 (56%), Positives = 74/109 (67%)
 Frame = -3

Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612
           ITTEVKSV MH  S   +       F  K    + ++RG VAGD KNNPPK    FTAQV
Sbjct: 144 ITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQV 203

Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPKI 465
           IV+NHPG+I  GY+PVLDCHTAHIACKF ++ EK+DRR+GK     PK+
Sbjct: 204 IVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKM 252



 Score =  102 bits (245), Expect = 3e-22
 Identities = 47/73 (64%), Positives = 60/73 (82%)
 Frame = -1

Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293
           PK IK+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+  EA GGK
Sbjct: 250 PKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVDKTEAAGGK 309

Query: 292 VN*SCRKGHQGQE 254
              +  K  +G++
Sbjct: 310 TTKAATKVIKGKK 322


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = -1

Query: 445 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 329
           A V L  S+P+CVE ++++  LGRF +R    T+A GVI
Sbjct: 40  AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 359
           P+ IK    AI  L     +C+E F +F  +GRF +RD
Sbjct: 508 PRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545


>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 34  LFYEFTL*XCSHNKMFQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNE 207
           LFY   L        +QI+Y+  Y   KI +H++  K  RK + L  FFPS  H +    
Sbjct: 293 LFYAIVLIFIIGYYPYQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGN 351

Query: 208 VSQL 219
           +SQL
Sbjct: 352 ISQL 355


>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
          Length = 903

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 439 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 350
           +++VP++P CV SF EF  +    +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409


>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
          Length = 495

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 318 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 416
           LT+L  PT    L  RT  +PR G  W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441


>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
          Length = 1097

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 333 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 428
           TP+  VCL+SR  + PR    W     R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,218,094
Number of Sequences: 59808
Number of extensions: 475241
Number of successful extensions: 1156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)