Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K08
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...   134   9e-32
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...   134   9e-32
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...   134   9e-32
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    45   5e-05
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   3.8  
AC024757-9|AAF59445.1|  133|Caenorhabditis elegans Hypothetical ...    29   3.8  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score =  134 bits (323), Expect = 9e-32
 Identities = 66/108 (61%), Positives = 74/108 (68%)
 Frame = -3

Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612
           +TTEVKSV MH  S P +       F  K    + +RRG V  DSK +P K A  F AQV
Sbjct: 251 VTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQV 310

Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468
           I++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK     PK
Sbjct: 311 IIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPK 358



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 45/67 (67%), Positives = 53/67 (79%)
 Frame = -1

Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293
           PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V   +   GK
Sbjct: 357 PKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGK 416

Query: 292 VN*SCRK 272
           V  S +K
Sbjct: 417 VTKSAQK 423


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score =  134 bits (323), Expect = 9e-32
 Identities = 66/108 (61%), Positives = 74/108 (68%)
 Frame = -3

Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612
           +TTEVKSV MH  S P +       F  K    + +RRG V  DSK +P K A  F AQV
Sbjct: 285 VTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQV 344

Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468
           I++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK     PK
Sbjct: 345 IIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPK 392



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 45/67 (67%), Positives = 53/67 (79%)
 Frame = -1

Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293
           PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V   +   GK
Sbjct: 391 PKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGK 450

Query: 292 VN*SCRK 272
           V  S +K
Sbjct: 451 VTKSAQK 457


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score =  134 bits (323), Expect = 9e-32
 Identities = 66/108 (61%), Positives = 74/108 (68%)
 Frame = -3

Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612
           +TTEVKSV MH  S P +       F  K    + +RRG V  DSK +P K A  F AQV
Sbjct: 285 VTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQV 344

Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468
           I++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK     PK
Sbjct: 345 IIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPK 392



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 45/67 (67%), Positives = 53/67 (79%)
 Frame = -1

Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293
           PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V   +   GK
Sbjct: 391 PKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGK 450

Query: 292 VN*SCRK 272
           V  S +K
Sbjct: 451 VTKSAQK 457


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = -1

Query: 469 KSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 320
           K +K  +  I+ L   +P  +E F+E+P LGRF +RD  +T+A+G V+K V
Sbjct: 481 KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531



 Score = 31.9 bits (69), Expect = 0.54
 Identities = 21/77 (27%), Positives = 39/77 (50%)
 Frame = -3

Query: 719 RFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 540
           +F+ K      L+ G++   S ++  K    F A+V+VL H   I++GY+ VL   +A  
Sbjct: 401 KFKLKGIEENELQGGFIIC-SPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVE 459

Query: 539 ACKFAEIKEKVDRRTGK 489
                 +   +D++TG+
Sbjct: 460 EVTVKGVIATIDKKTGE 476


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 320
           P+ I  G +A+V +     + +E+F     LGR   R    T+A G+++ V
Sbjct: 538 PRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 320
           P+ I  G +A+V +     + +E+F     LGR   R    T+A G+++ V
Sbjct: 556 PRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 178 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 71
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>AC024757-9|AAF59445.1|  133|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.9 protein.
          Length = 133

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -1

Query: 349 TVAVGVIKAVNFKEAGGG--KVN*SCRKGHQGQEVARAVNSTIFHTTAILHSPKGVSKEK 176
           +++VG+ K  NFK + GG  K + S RK    Q    AV        +   + K VSK  
Sbjct: 8   SLSVGIRKFKNFKRSAGGVQKFSGSARKSTNKQSTNAAVRIIENRVASTNFNKKSVSKAT 67

Query: 175 RATNS 161
           R  +S
Sbjct: 68  RNISS 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,181,588
Number of Sequences: 27780
Number of extensions: 354119
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)