BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_K08 (796 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 129 2e-30 At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 129 2e-30 At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 129 2e-30 At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 129 2e-30 At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 83 3e-16 At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 45 5e-05 At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 37 0.013 At4g27900.2 68417.m04005 expressed protein 32 0.50 At4g27900.1 68417.m04004 expressed protein 32 0.50 >At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana] Length = 449 Score = 129 bits (311), Expect = 2e-30 Identities = 61/108 (56%), Positives = 77/108 (71%) Frame = -3 Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612 +TTEVKSV MH S + F K + L+RGYVA +SK++P KGAA+FT+QV Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332 Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468 I++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK +PK Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380 Score = 89.8 bits (213), Expect = 2e-18 Identities = 40/61 (65%), Positives = 51/61 (83%) Frame = -1 Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293 PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+ G K Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAK 438 Query: 292 V 290 V Sbjct: 439 V 439 >At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 129 bits (311), Expect = 2e-30 Identities = 61/108 (56%), Positives = 77/108 (71%) Frame = -3 Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612 +TTEVKSV MH S + F K + L+RGYVA +SK++P KGAA+FT+QV Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332 Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468 I++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK +PK Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380 Score = 89.8 bits (213), Expect = 2e-18 Identities = 40/61 (65%), Positives = 51/61 (83%) Frame = -1 Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293 PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+ G K Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAK 438 Query: 292 V 290 V Sbjct: 439 V 439 >At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 129 bits (311), Expect = 2e-30 Identities = 61/108 (56%), Positives = 77/108 (71%) Frame = -3 Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612 +TTEVKSV MH S + F K + L+RGYVA +SK++P KGAA+FT+QV Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332 Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468 I++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK +PK Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380 Score = 89.8 bits (213), Expect = 2e-18 Identities = 40/61 (65%), Positives = 51/61 (83%) Frame = -1 Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293 PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+ G K Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAK 438 Query: 292 V 290 V Sbjct: 439 V 439 >At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 129 bits (311), Expect = 2e-30 Identities = 61/108 (56%), Positives = 77/108 (71%) Frame = -3 Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612 +TTEVKSV MH S + F K + L+RGYVA +SK++P KGAA+FT+QV Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332 Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468 I++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK +PK Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380 Score = 89.8 bits (213), Expect = 2e-18 Identities = 40/61 (65%), Positives = 51/61 (83%) Frame = -1 Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293 PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+ G K Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAK 438 Query: 292 V 290 V Sbjct: 439 V 439 >At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-containing protein similar to SP|P13905 Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis thaliana}; contains Pfam profile PF03143: Elongation factor Tu C-terminal domain Length = 104 Score = 82.6 bits (195), Expect = 3e-16 Identities = 35/60 (58%), Positives = 48/60 (80%) Frame = -1 Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293 PK +K+ +AAI+N+ P+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V K+ G K Sbjct: 45 PKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSVVKKDPSGAK 104 Score = 69.3 bits (162), Expect = 3e-12 Identities = 30/46 (65%), Positives = 35/46 (76%) Frame = -3 Query: 605 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468 +NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG +PK Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPK 46 >At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein, putative similar to EF-1-alpha-related GTP-binding protein gi|1009232|gb|AAA79032 Length = 532 Score = 45.2 bits (102), Expect = 5e-05 Identities = 17/45 (37%), Positives = 29/45 (64%) Frame = -1 Query: 463 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 329 +K+G A + + + +C+E F +FP LGRF +R +T+AVG + Sbjct: 478 VKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522 Score = 31.5 bits (68), Expect = 0.67 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -3 Query: 650 NPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGK 489 NP +F AQ+ +L + GY +L H C+ E+K ++D +T K Sbjct: 414 NPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRK 469 >At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / EF-1-alpha, putative contains similarity to SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha) [Aeropyrum pernix] Length = 667 Score = 37.1 bits (82), Expect = 0.013 Identities = 16/51 (31%), Positives = 30/51 (58%) Frame = -1 Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 320 P+ + + +A++ + P+CVE+F E LGR +R +TVA+G + + Sbjct: 613 PRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663 >At4g27900.2 68417.m04005 expressed protein Length = 261 Score = 31.9 bits (69), Expect = 0.50 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = -1 Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 380 PKS+ SG+ + +++V K ++ F +FPP+ Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174 >At4g27900.1 68417.m04004 expressed protein Length = 261 Score = 31.9 bits (69), Expect = 0.50 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = -1 Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 380 PKS+ SG+ + +++V K ++ F +FPP+ Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,215,175 Number of Sequences: 28952 Number of extensions: 326068 Number of successful extensions: 814 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 786 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 810 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1794809600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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