Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K08
(796 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 129 2e-30
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 129 2e-30
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 129 2e-30
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 129 2e-30
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 83 3e-16
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 45 5e-05
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 37 0.013
At4g27900.2 68417.m04005 expressed protein 32 0.50
At4g27900.1 68417.m04004 expressed protein 32 0.50
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 129 bits (311), Expect = 2e-30
Identities = 61/108 (56%), Positives = 77/108 (71%)
Frame = -3
Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612
+TTEVKSV MH S + F K + L+RGYVA +SK++P KGAA+FT+QV
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332
Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468
I++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK +PK
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/61 (65%), Positives = 51/61 (83%)
Frame = -1
Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293
PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+ G K
Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAK 438
Query: 292 V 290
V
Sbjct: 439 V 439
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 129 bits (311), Expect = 2e-30
Identities = 61/108 (56%), Positives = 77/108 (71%)
Frame = -3
Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612
+TTEVKSV MH S + F K + L+RGYVA +SK++P KGAA+FT+QV
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332
Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468
I++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK +PK
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/61 (65%), Positives = 51/61 (83%)
Frame = -1
Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293
PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+ G K
Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAK 438
Query: 292 V 290
V
Sbjct: 439 V 439
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 129 bits (311), Expect = 2e-30
Identities = 61/108 (56%), Positives = 77/108 (71%)
Frame = -3
Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612
+TTEVKSV MH S + F K + L+RGYVA +SK++P KGAA+FT+QV
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332
Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468
I++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK +PK
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/61 (65%), Positives = 51/61 (83%)
Frame = -1
Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293
PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+ G K
Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAK 438
Query: 292 V 290
V
Sbjct: 439 V 439
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 129 bits (311), Expect = 2e-30
Identities = 61/108 (56%), Positives = 77/108 (71%)
Frame = -3
Query: 791 ITTEVKSVGMHXXSSPRSCTWRQCRFQRKERVRQGLRRGYVAGDSKNNPPKGAADFTAQV 612
+TTEVKSV MH S + F K + L+RGYVA +SK++P KGAA+FT+QV
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332
Query: 611 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468
I++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK +PK
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/61 (65%), Positives = 51/61 (83%)
Frame = -1
Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293
PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+ G K
Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAK 438
Query: 292 V 290
V
Sbjct: 439 V 439
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 82.6 bits (195), Expect = 3e-16
Identities = 35/60 (58%), Positives = 48/60 (80%)
Frame = -1
Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 293
PK +K+ +AAI+N+ P+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V K+ G K
Sbjct: 45 PKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSVVKKDPSGAK 104
Score = 69.3 bits (162), Expect = 3e-12
Identities = 30/46 (65%), Positives = 35/46 (76%)
Frame = -3
Query: 605 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSN*SQPK 468
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG +PK
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPK 46
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = -1
Query: 463 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 329
+K+G A + + + +C+E F +FP LGRF +R +T+AVG +
Sbjct: 478 VKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -3
Query: 650 NPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGK 489
NP +F AQ+ +L + GY +L H C+ E+K ++D +T K
Sbjct: 414 NPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRK 469
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = -1
Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 320
P+ + + +A++ + P+CVE+F E LGR +R +TVA+G + +
Sbjct: 613 PRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 380
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 472 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 380
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,215,175
Number of Sequences: 28952
Number of extensions: 326068
Number of successful extensions: 814
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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