Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K07
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   4.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   4.1  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    27   4.1  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   5.5  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    26   7.2  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   7.2  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   9.5  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    25   9.5  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 137 PLFPHTRRSPXPVHVRIQLQALPVLP--VLDEEQLLVAHL 250
           PLF    +S  P+ + + LQAL V P  +L E + ++  L
Sbjct: 852 PLFAVVEKSKNPIILHVVLQALDVFPWDLLGEHKKIIQQL 891


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 248 GGRPTAVPHREPGVPAGPE 192
           GG PTA P  EP V  G E
Sbjct: 835 GGNPTAAPTNEPTVTTGTE 853


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -1

Query: 637 PCRSRTSCGTRAXKDIVEDYFPSEFQLILDQKRI--KLIGKHYNQA--LKLDANVDRYND 470
           P  + T     A  D+V+ Y+P EF   +D + +  KL  K+      ++LD    R ND
Sbjct: 663 PSTTVTPKSRDAVMDVVQKYYPPEFLNRIDDQIVFNKLSEKNLEDIVNVRLDEVQQRLND 722

Query: 469 R 467
           R
Sbjct: 723 R 723


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 135 SRCSPTQGGPRYQSTFASSFRP 200
           S+ S TQ  PR  ST A SF+P
Sbjct: 135 SKYSITQDSPRVSSTIAYSFKP 156


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -1

Query: 394 NNVIFKILNTEHEMYLKLDVNVDSYGDRKTWGS--NDSSEKRHTWYLYPVKVGDQQLFLI 221
           N V+   L   HE+  K+DV +D+ GD     S  N         Y+   K G  +    
Sbjct: 188 NTVVDPELKRVHELVEKVDVVIDTVGDPLLMKSALNQLGIGGRLSYISAPKQGSIEFSYD 247

Query: 220 ENREYRQGLKL 188
             + YR+ LK+
Sbjct: 248 MKQIYRKNLKI 258


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 412 ISLWENNNVIFKILNTEHEMYLKLDVNVDSYGDRKTWGSNDSSEKRHTWYLY 257
           ISL    +V  + L +  E+ L L++ ++ YG  K W S D S  ++   LY
Sbjct: 109 ISLKSEKDVFLQGLLSMDEIELLLEIFIERYG--KRWLSVDYSASQYMELLY 158


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 401 GKQQRHLQDTEHRTRDVLETGRERGQLRRQ 312
           GK Q HL+  E   RD+ E   E   LR +
Sbjct: 384 GKLQAHLEKFEQTERDISEKNEEVKSLREK 413


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 467 PNLGRRKRLHQLPSQLATHLSLGKQQRHLQD 375
           P L  RK++  +   +AT L    Q+RHL D
Sbjct: 368 PELTARKQILDMHMNIATALLKAIQERHLDD 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,926
Number of Sequences: 5004
Number of extensions: 54104
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)