Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K07
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0521 + 3867922-3867967,3868282-3868544,3868680-3868744,386... 33 0.27
09_04_0460 - 17779111-17780184 31 1.1
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 30 1.9
07_01_0975 + 8223269-8224354 30 2.5
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668... 29 4.3
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100... 29 4.3
11_05_0077 - 18866707-18867334,18867410-18867555 28 7.6
01_01_0888 + 6990354-6991862,6991970-6992431 28 7.6
01_01_0728 + 5684699-5685025 28 7.6
03_06_0754 - 36025579-36027000 28 10.0
>07_01_0521 +
3867922-3867967,3868282-3868544,3868680-3868744,
3868828-3868990,3869798-3869946,3870041-3870289,
3870860-3871028,3871110-3871202,3871703-3871952,
3872127-3872217,3872673-3872769
Length = 544
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 71 VGGFHCHGWIMKP*YSGLSATVPLFPHTRRS 163
+ GF W++KP Y +S ++PLF + RRS
Sbjct: 107 ISGFSSLPWLIKPLYGFISDSIPLFGYRRRS 137
>09_04_0460 - 17779111-17780184
Length = 357
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = -1
Query: 328 DSYGDRKTWGSNDSSEKRHTWYLYPVKVGDQQLFLIENREYRQGLKLDANVDWXRG-PPC 152
D +GD + H WY+ V + + + I EYR G V W C
Sbjct: 107 DGFGDGDEEAGGGGGDVHHVWYIRTVGLDEATITSIATAEYRAG------VGWGGDCAVC 160
Query: 151 VGEQRDSRRQPRVLRLHNP 95
+GE RD + R +P
Sbjct: 161 LGEFRDGELVRLLPRCSHP 179
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 30.3 bits (65), Expect = 1.9
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 2/125 (1%)
Frame = -1
Query: 484 DRYNDRLTWGDGKDYTSYRVSWRLISLWENNNVIFKILNTEHEMYLKLDVNVDSYGDRKT 305
D D+ +WG+ S +W + + N + + + V+ + D+++
Sbjct: 1725 DSVKDKESWGNVPASPSDS-AWNAAPVSQGNESSDAKQSDSWDGWKSAGVDASTNKDKES 1783
Query: 304 WGSNDSSEKRHTWYLYPVKVGDQQLFLIENREYR-QGLKLDANVDW-XRGPPCVGEQRDS 131
WG+ +S W PV GD E E R + K D W RG G++ +
Sbjct: 1784 WGNVPASPSDSAWNAAPVSQGDDVWNSAEANESRNKDWKSDG---WGARGGNWRGQRNNP 1840
Query: 130 RRQPR 116
R PR
Sbjct: 1841 GRPPR 1845
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 163 PXTSPRSHPASGPAGTP-GSR*GTAVGRPPSPG 258
P +SP P+S P+G+P GS G+ G P + G
Sbjct: 252 PSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGG 284
>09_04_0687 +
19465594-19465780,19465994-19466022,19466731-19466803,
19467237-19467311,19467583-19467644,19467727-19467795,
19468447-19468475,19468553-19468760,19468867-19469100,
19469591-19470598
Length = 657
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -3
Query: 593 HRRRLLPERIPTHTRPKEN*THRQTLQSSSQTGC*R*PVQRPPNLGRRKRLHQLPSQ--L 420
H L+P P R +++ RQT S+ QT P+ PP G R +PS+
Sbjct: 554 HSAPLVPNSAPLAPRGQDHFRPRQTPPSAPQTAS---PLPTPP--GPISRSFSIPSRGMR 608
Query: 419 ATHLSLGKQQRHLQD 375
+ +S GK+ LQD
Sbjct: 609 TSGISDGKETEDLQD 623
>03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,
1008103-1008273,1008405-1008553,1008780-1008927,
1009015-1009083,1009168-1009416,1009516-1009710,
1009869-1009985,1010205-1011329
Length = 921
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = -1
Query: 517 YNQALKLDANVDRYNDRLTWGDGKDYTSYRVSWRLISLW-ENNNVIFKILNTEHEMYLKL 341
Y A L A + ND L + D+T + W +SLW E+ + + + +
Sbjct: 795 YTWANMLSAPRGQVNDPLITQNSTDFTVALMDWFWMSLWAEHIGAVEESFSCPESLECTR 854
Query: 340 DVNVDSYGDRKTWGSNDSSEKRHTWYLYPVKV 245
V + + + S++ SE R YPV V
Sbjct: 855 QVRHIGEQNWRQFASSEVSEMRGHLVKYPVSV 886
>11_05_0077 - 18866707-18867334,18867410-18867555
Length = 257
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 157 PCVGEQRDSRRQPRVLRLHNPAVAVKP 77
P VG +R +R PR+L H P V ++P
Sbjct: 68 PGVGARRGARAGPRLLPPHRPPVPLRP 94
>01_01_0888 + 6990354-6991862,6991970-6992431
Length = 656
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 437 QLPSQLATHLSLGKQQRHLQDTEHRTRD 354
+L Q+ THL G+QQ+ Q E R +D
Sbjct: 131 KLEKQITTHLRGGRQQQQQQQPEQRRQD 158
>01_01_0728 + 5684699-5685025
Length = 108
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 187 PASGPAGTPGSR*GTAVGRPPSPGI 261
P S PA T G+R +G PSPG+
Sbjct: 82 PLSPPAATTGARSSRMLGSVPSPGV 106
>03_06_0754 - 36025579-36027000
Length = 473
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 446 RLHQLPSQLATHLSLGKQQRHLQDTEHRTRDVLETGRER 330
R H++ Q+A +L L D EH R +L+T R
Sbjct: 145 RAHKMDKQVAATSALRTAMEDLADAEHGLRKLLQTSSSR 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,137,625
Number of Sequences: 37544
Number of extensions: 399752
Number of successful extensions: 1368
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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