Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K07
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00...    31   0.90 
At5g47850.1 68418.m05912 protein kinase, putative contains simil...    30   1.6  
At2g32040.1 68415.m03914 integral membrane transporter family pr...    30   1.6  
At5g51300.2 68418.m06360 splicing factor-related contains simila...    28   6.3  
At5g51300.1 68418.m06359 splicing factor-related contains simila...    28   6.3  
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    28   8.3  
At4g19230.1 68417.m02836 cytochrome P450 family protein cytochro...    28   8.3  

>At2g15640.1 68415.m01791 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 426

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 11/49 (22%), Positives = 28/49 (57%)
 Frame = -1

Query: 403 WENNNVIFKILNTEHEMYLKLDVNVDSYGDRKTWGSNDSSEKRHTWYLY 257
           WE++  I+K+  ++ + Y++ ++N D   + + W   D  +++ + Y Y
Sbjct: 278 WEDDVDIYKLYYSDVDEYVEYNINDDDINELRVWVLEDVKKQQWSKYAY 326


>At5g47850.1 68418.m05912 protein kinase, putative contains
           similarity to cytokinin-regulated kinase 1 [Nicotiana
           tabacum] gi|10998537|gb|AAG25966; contains protein
           kinase domain, Pfam:PF00069
          Length = 751

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 159 GPRYQSTFASSFRPCRYSRFSMRNSCWSPTF 251
           GP  +   A +FR C   R S R  CW P +
Sbjct: 122 GPELEELEAGNFRICGVERVSRRLRCWQPYY 152


>At2g32040.1 68415.m03914 integral membrane transporter family
           protein contains 9 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to high affinity
           folic acid/methotrexate transporter 5 (GI:21898554)
           [Leishmania tarentolae]
          Length = 560

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 95  WIMKP*YSGLSATVPLFPHTRRS 163
           W++KP Y  +S +VPLF + RRS
Sbjct: 173 WLVKPLYGFISDSVPLFGYRRRS 195


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 150 WGNNGTVADNPEYYGFIIQPWQ*NPPTSQT 61
           W NN +V+      G +  PW  NPP   T
Sbjct: 734 WANNPSVSTPDHSQGLVNAPWAPNPPMPPT 763


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 150 WGNNGTVADNPEYYGFIIQPWQ*NPPTSQT 61
           W NN +V+      G +  PW  NPP   T
Sbjct: 734 WANNPSVSTPDHSQGLVNAPWAPNPPMPPT 763


>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -1

Query: 448 KDYTSYRVSWRLISLWENNNVIFKILNTEHEMYLKLDVNVDSYGDRKTWG 299
           +D T+  +SW L  L EN NV+  +  TE +M ++ D      G+  TWG
Sbjct: 277 RDTTASVMSWILKYLAENPNVLEAV--TEEQMAIRKD---KEEGESLTWG 321


>At4g19230.1 68417.m02836 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 467

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -1

Query: 448 KDYTSYRVSWRLISLWENNNVIFKILNTEHEMYLKLDVNVDSYGDRKTWG 299
           +D T+  +SW L  L EN NV+  +  TE +M ++ D      G+  TWG
Sbjct: 277 RDTTASVMSWILKYLAENPNVLEAV--TEEQMAIRKD---KEEGESLTWG 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,860,595
Number of Sequences: 28952
Number of extensions: 303985
Number of successful extensions: 896
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)