Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K06
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56966-4|AAA98719.2|  906|Caenorhabditis elegans Ace(angiotensin...    45   7e-05
Z35663-4|CAA84724.1|  307|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    29   3.8  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   8.8  

>U56966-4|AAA98719.2|  906|Caenorhabditis elegans Ace(angiotensin
           converting enzyme)-like non-peptidase protein 1, isoform
           a protein.
          Length = 906

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = -2

Query: 336 WPDAMEALTGQREMKADGLLEYFRPLHDWLRAENQRTGEHIGWE 205
           W  A+E ++G+ E+ A  LLEY+ PL +WLR  N+     +GW+
Sbjct: 722 WLKALEMISGKGELDAQPLLEYYEPLINWLRNTNEIDQVVVGWD 765


>Z35663-4|CAA84724.1|  307|Caenorhabditis elegans Hypothetical
           protein T04A8.6 protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 282 LLEYFRPLHDWLR---AENQRTGEHIGW 208
           LL YFR   + LR   A N+RTG H GW
Sbjct: 48  LLGYFRQFGNVLRIRVARNRRTGNHKGW 75


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -1

Query: 769  CRDXQTEINQLYKMGIXQXRIPTVRIHPGPVPIRCVQKEDAAGRLQLPLLEAKGAAXKAW 590
            C++   ++NQL   GI +     VR+      ++ + + +AA  +Q  +  +  A   + 
Sbjct: 1332 CKELNVDLNQLQMDGILKDTEKLVRVPQQLCDVKLLTRPEAASPVQSKIHMSGSAEQLSG 1391

Query: 589  SRPSI-ELRTTSTPQPS 542
              P+I +    +TPQP+
Sbjct: 1392 MSPAIPDQVKPATPQPT 1408


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 275 STSGRSTTGCGRRTSGPASTSAGNRPT 195
           +TSG STT     TSGP++TS   + T
Sbjct: 573 TTSGPSTTSGPSTTSGPSTTSGSTKST 599


>Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical
           protein R03G8.6 protein.
          Length = 747

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = +3

Query: 444 VLARQLAQRTVELELDYERHVISGVFDVGRHMVLGCGVEVVLSSIDGRL 590
           ++  +L+Q T++L + +  + ++    +G  ++LGC  +  L  I G+L
Sbjct: 690 IMQLKLSQNTMDLIVAWAENGVNEEAKLGPKLMLGCSTKENLKKISGKL 738


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 208 PADVLAGPLVLRPQPVVERPEVLQEAVCLHLPLSGQRLHRVRP 336
           P   +  P+  RP P +ERPE  + A  +  P+  +    + P
Sbjct: 182 PTPYIERPVPARPAPYIERPEPARPAPYIERPVPARPAPYIEP 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,355,959
Number of Sequences: 27780
Number of extensions: 260615
Number of successful extensions: 926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)