Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K03
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    32   0.42 
AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    29   5.1  
U29381-10|AAA68748.1|  136|Caenorhabditis elegans Hypothetical p...    28   6.8  
AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three par...    28   6.8  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 29/109 (26%), Positives = 42/109 (38%)
 Frame = -2

Query: 760 KYQSTGPTMYTCLSLTPSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQY 581
           K   T PT  T +  TP+   +PT    T   PT ++S  T+PT     +P  + +K   
Sbjct: 257 KSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPT-----TP--TTMKSTP 309

Query: 580 QNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTKEVQVPLVKEVPYPVK 434
              T  +    TP+        K   T+PT  T     P     P  +K
Sbjct: 310 TTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMK 358



 Score = 31.5 bits (68), Expect = 0.73
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
 Frame = -2

Query: 760 KYQSTGPTMYTCLSLTPSMLKSPT---Q*PYTSQCPTKLRSPLTSPTR-SK*RSPIRSPL 593
           K   T PT  T +  TP+   +PT     P T   PT ++S  T+PT  +  +S   +P 
Sbjct: 231 KSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPT 290

Query: 592 KCQYQNLTKSSRKSL--TPSKRKCLMKSKCLLTSPTRSTKEVQVPLVKEVPYPVK 434
             +    T ++  ++  TP+        K   T+PT  T     P     P  +K
Sbjct: 291 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMK 345



 Score = 31.5 bits (68), Expect = 0.73
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = -2

Query: 760 KYQSTGPTMYTCLSLTPSMLKSPTQ*PYTSQCPTKLRSPLTSPTR-SK*RSPIRSPLKCQ 584
           K   T PT  T +  TP+   +PT    T   PT ++S  T+PT  +  +S   +P   +
Sbjct: 371 KSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMK 430

Query: 583 YQNLTKSSRKS--LTPSKRK 530
               T S+ KS   TP+  K
Sbjct: 431 STPTTPSTMKSSPTTPTTMK 450



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 3/125 (2%)
 Frame = -2

Query: 799 THTKSLRKAXGKSKYQSTGPTMYTCLSLTPSMLKSPT---Q*PYTSQCPTKLRSPLTSPT 629
           T  KS        K   T PT  T +  TP+   +PT     P T   PT ++S  T+PT
Sbjct: 166 TTIKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPT 225

Query: 628 RSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTKEVQVPLVKEV 449
                +P  + +K      T  +    TP+        K   T+PT  T     P     
Sbjct: 226 -----TP--TTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTT 278

Query: 448 PYPVK 434
           P  +K
Sbjct: 279 PTTMK 283



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 3/125 (2%)
 Frame = -2

Query: 799 THTKSLRKAXGKSKYQSTGPTMYTCLSLTPSMLKSPT---Q*PYTSQCPTKLRSPLTSPT 629
           T  KS        K   T PT  T +  TP+   +PT     P T   PT ++S  T+PT
Sbjct: 280 TTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPT 339

Query: 628 RSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTKEVQVPLVKEV 449
                +P  + +K      T  +    TP+        K   T+PT  T     P     
Sbjct: 340 -----TP--TTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTT 392

Query: 448 PYPVK 434
           P  +K
Sbjct: 393 PTTMK 397



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = -2

Query: 760 KYQSTGPTMYTCLSLTPSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQY 581
           K   T PT  T +  TP+   +    P T   PT ++S  T+PT  K      S +K   
Sbjct: 384 KSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPSTMKSSP 443

Query: 580 QNLTKSSRKSLT 545
              T     S+T
Sbjct: 444 TTPTTMKTSSIT 455



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 29/109 (26%), Positives = 41/109 (37%)
 Frame = -2

Query: 760 KYQSTGPTMYTCLSLTPSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQY 581
           K   T PT       TP+ +KS    P T   PT ++S  T+PT     +P  + +K   
Sbjct: 159 KSTPTTPTTIKSTPTTPTTMKST---PTTPTTPTTMKSTPTTPT-----TP--TTMKSTP 208

Query: 580 QNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTKEVQVPLVKEVPYPVK 434
              T  +    TP+        K   T+PT  T     P     P  +K
Sbjct: 209 TTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMK 257



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 760 KYQSTGPTMYTCLSLTPSMLKSPT---Q*PYTSQCPTKLRSPLTSPTRSK 620
           K   T PT  T +  TP+   +PT     P T   PT ++S  T+PT  K
Sbjct: 358 KSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMK 407


>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
 Frame = -2

Query: 715 TPSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQ-----YQNLTKSSRKS 551
           T   + +PT  P T+  PT    P TSP +        SP + +      QN T S++K+
Sbjct: 150 TKEKVTTPTPPPPTTTTPTTTLKPTTSPEKHSTTEEATSPSQNETTSVTTQNPTTSNQKN 209

Query: 550 LTPSKRKCLMKSKCLLTSPTRSTKEVQVP 464
            T  +      S    T+PT + K    P
Sbjct: 210 ETTDE---ATSSPPTTTTPTTTLKPTTSP 235


>U29381-10|AAA68748.1|  136|Caenorhabditis elegans Hypothetical
           protein F35D11.1 protein.
          Length = 136

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 760 KYQSTGPTMYTCLSLTPSMLKSPTQ*PYTSQC 665
           KY +   T   C+ +T  M K  T  PY S+C
Sbjct: 40  KYNNNCETNVFCVKITEPMTKEATYEPYRSEC 71


>AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three
           paralog protein 3 protein.
          Length = 739

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/82 (25%), Positives = 38/82 (46%)
 Frame = -2

Query: 700 KSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLM 521
           K  T+ P     PT+  SP+ SP + +       P K     + +SS+++ T +  +C  
Sbjct: 346 KRSTRAPAVPITPTEPASPVESPVKEQ-------PQKAPKAQMRRSSKRT-TKNNERCEQ 397

Query: 520 KSKCLLTSPTRSTKEVQVPLVK 455
           K +  + +P R +    VP V+
Sbjct: 398 KEEEPIVNPKRRSARRLVPPVE 419


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 485 YQGSSSAARQRSTLPGQ-VPRPYLLQE 408
           Y+ SSS++   S++P    PRPY L+E
Sbjct: 703 YKSSSSSSSSTSSIPSDPAPRPYFLKE 729


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,815,972
Number of Sequences: 27780
Number of extensions: 270041
Number of successful extensions: 875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)