Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K02
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    28   1.3  
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    27   2.3  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   5.4  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    26   5.4  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    26   7.1  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.1  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.4  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 70  HVADEIQKALKELEESNRKKKK 5
           H  DE+QK L+ LEE N K K+
Sbjct: 620 HEFDELQKRLQTLEEENNKAKE 641


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 229 SKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEES 116
           SKI  L  ++ + S+   T+  G  TDD   L VP+ S
Sbjct: 64  SKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLS 101


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 589 FRHINDTLCLNLSGVVLKPKFPHMIIQYDALENLVQY 699
           F  +  T   +L   VLKP+F H ++++   + +VQY
Sbjct: 4   FVTVGSTQFDDLIRAVLKPEFQHCLVKHGINQLIVQY 40


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = -2

Query: 298 LLPMTWXQGNEAIKSEIIQKDFDSKIEE-----LNPKQGSDSEPVETLEAGLKTDDSETL 134
           LL + +  G E  K +II    D  +EE      N     DSE   T E  L +DD E L
Sbjct: 315 LLELDYQLG-EVFKDQIIPLAIDCFLEEGDLSDFNQMDEEDSEDAYTDEEDLSSDDEEIL 373


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 229 SKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEES 116
           SKI  L  ++ +  E   T+  G  TDD   L VP+ S
Sbjct: 64  SKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLS 101


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -2

Query: 265 AIKSEIIQKDFDSKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEESQ 113
           A + + IQ++F+ +I +L  +Q      +E LEA  +  +SET +  ++ +
Sbjct: 134 AKEEQKIQEEFERQITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKE 184


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 721 DSQIRYENIELSSPKHRTELSYAEILAL 638
           D Q+R      SS KHR  + YA+ L L
Sbjct: 257 DDQVRLAKCLPSSSKHRDRILYAKFLEL 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,897
Number of Sequences: 5004
Number of extensions: 42270
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)