Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K02
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50450.1 68416.m05518 hypersensitive response protein 1 (HR1)...    33   0.29 
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    29   3.5  

>At3g50450.1 68416.m05518 hypersensitive response protein 1 (HR1)
           identical to HR1 [Arabidopsis thaliana] GI:12958166;
           contains Pfam profile PF05659: Arabidopsis
           broad-spectrum mildew resistance protein RPW8
          Length = 189

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 551 WLNVMKNLSLMCQLNKKLSASTRQRTDRLSSTERPAXXXXXXXXXXXXRAPEKRPTKVHD 372
           WL++ K +  M ++N KL   TRQ  D + +T R +                K  TK H+
Sbjct: 124 WLDIKKLMGKMSEMNTKLDDITRQPMDIIEATGRSSEEDGCTKPTIDIHFRWKNQTKEHE 183

Query: 371 IQ 366
           I+
Sbjct: 184 IR 185


>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -2

Query: 226 KIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEESQLXXXXXXXXXXXXKHVADEIQK 47
           K ++   K+  D E  +T E   K  + +  E   E+              KH  +E + 
Sbjct: 457 KKDKKKKKKADDEEEAKTEEPSKKKSNKKKTEAEPETA-EEPAKKEKKKKRKHEEEETEM 515

Query: 46  ALKELEESNRKKKKK 2
             K+ E+S +KKKKK
Sbjct: 516 PAKKKEKSEKKKKKK 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,050,873
Number of Sequences: 28952
Number of extensions: 207617
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)