Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K01
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    30   0.34 
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    28   1.4  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   4.1  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   7.2  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   7.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.6  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 403 SVGGGAWPXLVGGAICLVNSGNERDXSLLNRRRYLGVRGLVSRNSLTT 260
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/62 (35%), Positives = 26/62 (41%)
 Frame = +1

Query: 406 QERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATILPPXVQNLWFPGS 585
           +   V L  LP+ G      VES     + P  ALP  PLSFS     P    N+  P S
Sbjct: 398 ENELVKLFFLPLDGD-----VESPHPTSTMPE-ALPREPLSFSLPEKAPEKATNISIPES 451

Query: 586 CP 591
            P
Sbjct: 452 AP 453


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 458 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRXSKIFGFPEAARRXIV 604
           FPVL QI+P  P L +  R F+  S+    SP+ +K F  P  +   +V
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPK-AKEFDRPLPSTEFLV 487


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 424 LSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATIL 549
           +SIL V+GP +  R+  +   G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 389 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 484
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 355  DKSLHQLXTAMHHHPPNQERAVNLSILPV 441
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,457
Number of Sequences: 5004
Number of extensions: 46830
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)