Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J24
         (865 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   171   8e-43
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   4e-20
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                  95   5e-20
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 64   1e-10
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 37   0.024
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.043
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  28   8.5  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  171 bits (415), Expect = 8e-43
 Identities = 104/195 (53%), Positives = 118/195 (60%), Gaps = 4/195 (2%)
 Frame = -2

Query: 780  PXXLGDXSXGVQYLXEIKXSFVXXXQGPXRK-ELWLKRIXVVLDSTSMM*HPILMPSIEV 604
            P  L D S GVQYL EIK S V   Q   ++  L  + +  V  +     H + + +  +
Sbjct: 634  PNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGVRFNI----HDVTLHADAI 689

Query: 603  VAKSFQQXEDA--CTHVC*LLS-PVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEES 433
                 Q    A    + C L + P L      V+   PE AVGGIYGVLNRRRG V EES
Sbjct: 690  HRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEES 749

Query: 432  QVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH*QVLPGDPCEPQSKPYNV 253
             VAGTPMFIVKAYLPV ESFGFTADLRS TGGQAFPQCVFDH QVLPGD  +  S P  V
Sbjct: 750  NVAGTPMFIVKAYLPVMESFGFTADLRSKTGGQAFPQCVFDHWQVLPGDVHDLASMPGQV 809

Query: 252  VQETRKRKGLKEDLP 208
            V  TRKRKGLKE +P
Sbjct: 810  VANTRKRKGLKEGIP 824



 Score =  112 bits (269), Expect = 4e-25
 Identities = 58/111 (52%), Positives = 67/111 (60%)
 Frame = -1

Query: 817 RKIXXLXPEGTXPQXXGGLXXRXSVPX*N*GXFCGXXPGAXKEGVMAEENLXGVRFNIYD 638
           RKI    PEGT P     +                    A KEG + +EN+ GVRFNI+D
Sbjct: 622 RKIWSFGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGVRFNIHD 681

Query: 637 VTPHTDAIHRGGGQIIPTXRRCLYACLLTAQPRXMEPVYLCEIQCP*SSCG 485
           VT H DAIHRGGGQIIPT RR LYAC+LTA+P  +EPVY  EIQCP S+ G
Sbjct: 682 VTLHADAIHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAVG 732


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 95.9 bits (228), Expect = 4e-20
 Identities = 42/92 (45%), Positives = 61/92 (66%)
 Frame = -2

Query: 552 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 373
           + +P L   Y FV+   P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SF
Sbjct: 690 MATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSF 749

Query: 372 GFTADLRSNTGGQAFPQCVFDH*QVLPGDPCE 277
           GF  DLR++T GQAF   VF H Q++PGDP +
Sbjct: 750 GFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 781



 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 32/67 (47%), Positives = 41/67 (61%)
 Frame = -1

Query: 700 AXKEGVMAEENLXGVRFNIYDVTPHTDAIHRGGGQIIPTXRRCLYACLLTAQPRXMEPVY 521
           A +EG + +E +  V+F I D     + IHRGGGQIIPT RR  Y+  L A PR MEP +
Sbjct: 641 ATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYF 700

Query: 520 LCEIQCP 500
             E+Q P
Sbjct: 701 FVEVQAP 707


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 42/90 (46%), Positives = 60/90 (66%)
 Frame = -2

Query: 546 SPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGF 367
           +P L   Y FV+   P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFGF
Sbjct: 2   TPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGF 61

Query: 366 TADLRSNTGGQAFPQCVFDH*QVLPGDPCE 277
             DLR++T GQAF   VF H Q++PGDP +
Sbjct: 62  ETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 91


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 30/69 (43%), Positives = 42/69 (60%)
 Frame = -2

Query: 489 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 310
           +G +Y V+ RR G V  E    G+ +F V+A LPV ESFGF+ ++R  T G A PQ +F 
Sbjct: 427 LGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFGFSEEIRKRTSGLANPQLMFS 486

Query: 309 H*QVLPGDP 283
           H + +  DP
Sbjct: 487 HWEAIDLDP 495


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 25/79 (31%), Positives = 37/79 (46%)
 Frame = -2

Query: 570 CTHVC*LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYL 391
           C H   +LS   W  + F    V +   G +   +NRR G V       G   F + A +
Sbjct: 130 CQHCWLMLSLFAWG-FSFASGDVCDT--GTVIAGVNRRHGQVTGTDANEG--YFTLFAEV 184

Query: 390 PVNESFGFTADLRSNTGGQ 334
           P+N+ FG+  +LRS T G+
Sbjct: 185 PLNDMFGYATELRSQTQGK 203


>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = -3

Query: 389 LSMSRSVLLPICVPTPADRPSRSAYSTIDRSSLETRANLRASPTTLYRKRERGKD*RKIS 210
           +S +   L P+ VPTPA R      S + RS  +TRAN+R SP       +RG    K S
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSPRYHDHSHQRGSPKTKTS 210


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 616 IHRGGGQIIPTXRRCLYACLLTAQPRXMEPVYL 518
           + R   +I+PT RR  +  LLT+     +PVY+
Sbjct: 538 VRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 305 QWSNTHCGKACPPVLE--RKSAVKPNDSL 385
           Q+   +CG ACPP  E   KS VK N  L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 443  SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIDRSSL 291
            +K P +   L SL  P  +  S S  L    P+P  +PS    S I +S++
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,746,767
Number of Sequences: 59808
Number of extensions: 498239
Number of successful extensions: 1149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)