Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_J23
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.8
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 28 1.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 24 1.8
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 4.2
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 4.2
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 26 5.5
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 26 7.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 7.3
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 26 7.3
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 25 9.7
>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 158
Score = 27.9 bits (59), Expect = 1.8
Identities = 26/84 (30%), Positives = 36/84 (42%)
Frame = +2
Query: 434 CPWLSPQARRLLYESTLESSFRA*L*YLPMIFTLSCLVINLISEGKKSLTISWCPADHNL 613
CP LS + +Y+ST S + PM L V+ + G + T H L
Sbjct: 62 CPSLSDEELVSIYQSTGLSPTSSSPSLSPMTPNLYPNVLPNVHPGVSNYT------HHPL 115
Query: 614 SAYANTLGSRARKSLSISLLDHKT 685
S +GSR RKS I ++D T
Sbjct: 116 SGLHQNVGSRTRKSSGIPIIDPVT 139
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 256 KLTPVVLETGNVLLIENHE-YGQSLKLDAHVDSYGD 152
K+ P + E + +E HE +SLKL HVD+ D
Sbjct: 461 KVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVND 496
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.8 bits (49), Expect(2) = 1.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 554 LISEGKKSLTISWCPAD 604
L K +L++SWCP D
Sbjct: 256 LTGHQKAALSLSWCPED 272
Score = 22.2 bits (45), Expect(2) = 1.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 587 SWCPADHNLSAYANTLGSRARKSLSISLLDHKTDVII 697
SWCP++ N A A+ G + S+ + D + I
Sbjct: 310 SWCPSNSNRVAVASLEGKVSIFSIQSTNTDKSQEASI 346
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/84 (21%), Positives = 32/84 (38%)
Frame = -3
Query: 374 YKILNTEYTMYLKLDMNVEEXRRQESVGFQQLERERPSVEADACSAGDRQRLTHREPRVR 195
YK++ + LD EE ++ + F++ E RP + RL R
Sbjct: 863 YKLIESIKKSEKSLDKQAEERDKKYLLYFEEREEARPKADQYGSLINIVSRLLDASNRST 922
Query: 194 AESEAGRARGQLRRPPALGKQWKR 123
+ E + + R A+ K+ R
Sbjct: 923 SSFETSKNMEEYERIDAMAKEQSR 946
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -2
Query: 621 YADKLWSAGHHDIVNDFFPSEIKLITKQERVKIIGRYYNQALKLDSNVDSYNNRLAWGDS 442
Y D+ W + I D P + L+ Q +V G+Y N L+ V++ + A D+
Sbjct: 327 YTDEYWEK-RYVIREDQVPPQ--LLDLQNKVLFAGKYLNVVLECRKGVNNLASLNAKDDT 383
Query: 441 QGQ 433
Q Q
Sbjct: 384 QNQ 386
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 117 PSTFPLFPQSRRSP*LSTCASSFRLCPYSWF 209
P + PQ+ L C +S LC YS F
Sbjct: 255 PEVLAVLPQNESMSSLEACINSLYLCDYSGF 285
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 241 LQASASTDGLSRSSCWNPTLSCLRYSSTFMSSFRYIV 351
+ A AST+ + +SC N L L S+ F+ ++ V
Sbjct: 296 IPAVASTNAIIAASCCNEALKILTESNPFLDNYMMYV 332
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Frame = -3
Query: 422 RVSWKFIPVWENNKLLYKILNTEYTMYLKLDMNVEEXRRQESVGFQQLERERPSVEA--- 252
R F EN K LY+ +NT T+ ++ + E +Q + + RPS
Sbjct: 300 RARASFSNFMENEKKLYEKVNTNRTLLRNANLTLNE-AQQSVKSLTERQGPRPSDNGVQD 358
Query: 251 --DACSAGDRQRLTHREPRVRAESEAGRAR 168
+ + ++L H ++ + E G R
Sbjct: 359 LQEKMQEVNAEKLQHENEKLESSHELGSIR 388
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = -1
Query: 277 NEKGHLWKLTPVVLETGNVLLIENHEYGQSLKLDAHVDS 161
N ++++ TPV + + H ++++ DAH+DS
Sbjct: 541 NLTSNIYRWTPVSTNSTSKNSFNGHTINENMRYDAHMDS 579
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 195 PYSWFSMSKTLPVS 236
P SW+S+SK +PVS
Sbjct: 34 PASWYSLSKKVPVS 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,722
Number of Sequences: 5004
Number of extensions: 66531
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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