Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J23
         (814 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27580.1 68414.m03361 F-box family protein similar to F-box p...    29   2.8  
At1g23010.1 68414.m02875 multi-copper oxidase type I family prot...    29   2.8  
At1g23230.1 68414.m02906 expressed protein                             29   3.7  
At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to a...    29   4.9  
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat...    28   6.4  
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ...    28   8.5  

>At1g27580.1 68414.m03361 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]; confirmed by FLcDNA GI:16604421; contains
           uncharacterized Arabidoppsis domain shared by 33
           Arabidopsis proteins;simlar to unknown protein
           GB:AAC63676
          Length = 364

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 187 DSARTRGSL*VRR--CRSPALQASASTDGLSRSSCWNPTLSCLRYSSTFMSSFRYI 348
           DSA+   S  ++R   RSP L  SA  DG   +S +NP    +  + +  S +R++
Sbjct: 10  DSAKALRSNLIQRPKARSPLLMLSAEKDGCRSNSVYNPYNDRVYETKSDFSGYRFL 65


>At1g23010.1 68414.m02875 multi-copper oxidase type I family protein
           similar to SP|P07788 Spore coat protein A {Bacillus
           subtilis}; contains Pfam profile PF00394: Multicopper
           oxidase
          Length = 581

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 436 SLAVSPGQAVVVRVDIGVQLQSLIVISSDDFHPFLLGDQFDFRREKVIDYIV 591
           S+ +SP + V V VD        +V+++D  +P+  GD  +    KV+ +I+
Sbjct: 333 SILLSPSEIVDVVVDFYKSPSRTVVLANDAPYPYPSGDPVNEENGKVMKFII 384


>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 430  ILSLAVSPGQAVVVRVDIGVQLQSLIVISSDDFH 531
            ILSL VS  Q V   V I V +QS ++ S + FH
Sbjct: 1296 ILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFH 1329


>At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to
           alternative NADH-dehydrogenase [Yarrowia lipolytica]
           GI:3718005, 64 kDa mitochondrial NADH dehydrogenase
           [Neurospora crassa] GI:4753821; contains Pfam profile
           PF00070: Pyridine nucleotide-disulphide oxidoreductase
          Length = 582

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 520 DDFHPFLLGDQFDFRREKVIDYIVVSGGPQLVRVCEHVRFSCAQESVDQPPRS 678
           D F    L +  D  R++++ ++VV GGP  V     +     ++ V   PR+
Sbjct: 204 DSFEKASLPELSDEERKRILHFVVVGGGPTGVEFAAELHDFVTEDLVSLYPRA 256


>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
           similar to CLIP-associating protein CLASP2 (GI:13508651)
           [Rattus norvegicus]
          Length = 1439

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +1

Query: 148 GGRRSCPRARPASDSARTRGSL*VRRCRSPALQASASTDGLSRSSCWNPTLSCLRYSSTF 327
           GGR S  R R   DS    G +       PA    A  DGL+ SS W   ++   +  T 
Sbjct: 761 GGRMSAGRRRSFDDSQLQIGDI-SNFVDGPASLNEALNDGLNSSSDWCARVAAFNFLQTL 819

Query: 328 M 330
           +
Sbjct: 820 L 820


>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1780

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 212 REPRVRAESEAGRARGQLRRPPALGKQWKRRW 117
           R P VRA + A +  G LRRPP +  QW+  +
Sbjct: 44  RFPEVRAAAAALKTVGDLRRPPYV--QWRSHY 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,822
Number of Sequences: 28952
Number of extensions: 356604
Number of successful extensions: 1016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)