Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J20
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)                   28   7.5  
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_59481| Best HMM Match : Exc (HMM E-Value=5.1)                       28   10.0 
SB_29540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
          Length = 491

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 689 PYPVTVHKPVPYEVKVPVDKPXQGRSR 609
           P P  V++P+ + V+VP   P +G SR
Sbjct: 285 PVPFVVNRPIHHTVQVPYPVPVRGPSR 311


>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 237 FVVVFCVLIGCCEHYL 190
           F++V+C+++GCC  YL
Sbjct: 3   FMLVWCIVVGCCMAYL 18


>SB_59481| Best HMM Match : Exc (HMM E-Value=5.1)
          Length = 265

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 228 VFCVLIGCCEHYLRRR 181
           VFCV+ G C+H LR R
Sbjct: 51  VFCVVAGVCQHVLRSR 66


>SB_29540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 228 VFCVLIGCCEHYLRRR 181
           VFCV+ G C+H LR R
Sbjct: 11  VFCVVAGVCQHVLRSR 26


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,004,242
Number of Sequences: 59808
Number of extensions: 302357
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)