Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_J19
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 175 4e-45
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 142 5e-35
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 134 1e-32
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 126 5e-30
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 120 2e-28
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 120 3e-28
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 88 2e-18
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 87 2e-18
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 83 6e-17
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 78 1e-15
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 75 1e-14
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 71 2e-13
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 67 3e-12
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 64 2e-11
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 58 1e-09
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 54 2e-08
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 54 3e-08
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 54 3e-08
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 52 1e-07
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 51 2e-07
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 27 2.3
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 5.2
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 9.1
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 9.1
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 175 bits (427), Expect = 4e-45
Identities = 89/126 (70%), Positives = 98/126 (77%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTML KAVA+ A FIRVVGSEFVQKYLGEGPRMVRDVFR+A+EN+P
Sbjct: 177 PGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEI 236
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
ATKRFDAQTGADREVQRIL+ELL QMDGFDQ NVKVIMATNRADTLDP + + P
Sbjct: 237 DAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLR--PG 294
Query: 366 RQKNRV 349
R ++
Sbjct: 295 RLDRKI 300
Score = 96.7 bits (230), Expect = 3e-21
Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFP-LPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINA 216
PALLRPGRLDRKIEFP DRRQ+RL+F TIT KM LS EVDL+ F+ RPD SGA I A
Sbjct: 288 PALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAA 347
Query: 215 ICQEAGMHAVQ 183
I Q+AG+ AV+
Sbjct: 348 IMQDAGLLAVR 358
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
QIGI+PPRGVL+YGPP
Sbjct: 162 QIGIDPPRGVLLYGPP 177
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 142 bits (344), Expect = 5e-35
Identities = 67/117 (57%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKAVA+ +A F+RVVGSE +QKYLG+GPR+VR +F A+E+SP
Sbjct: 234 PGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEI 293
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQT-TNVKVIMATNRADTLDPCVAK 379
TKR+DAQ+GA+RE+QR +LELLNQ+DGFD + ++KVIMATNR LDP + +
Sbjct: 294 DAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIR 350
Score = 79.8 bits (188), Expect = 4e-16
Identities = 38/74 (51%), Positives = 54/74 (72%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL+RPGR+DRKI F PD KR IF+ T+KMNL ++V+LEE + D +SGA+I AI
Sbjct: 346 PALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAI 405
Query: 212 CQEAGMHAVQGKQI 171
EAG+ A++ +++
Sbjct: 406 VSEAGLLALRERRM 419
Score = 29.5 bits (63), Expect = 0.56
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI+PP+GV++YG P
Sbjct: 219 EMGIKPPKGVILYGAP 234
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 134 bits (324), Expect = 1e-32
Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LA+AVAHH FIRV GSE VQKY+GEG RMVR++F +A+E++P
Sbjct: 188 PGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEI 247
Query: 546 XXXATKRFDAQTGA-DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
+ R D+ G+ D EVQR +LELLNQ+DGF+ T N+KVIMATNR D LDP + +
Sbjct: 248 DSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLR 304
Score = 71.3 bits (167), Expect = 1e-13
Identities = 32/91 (35%), Positives = 53/91 (58%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGR+DRKIEFP P + I + MNL+ +DL+ + + SGA++ +
Sbjct: 300 PALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGV 359
Query: 212 CQEAGMHAVQGKQIYCPSLKISKRVTRITSR 120
C EAGM A++ ++++ V ++ ++
Sbjct: 360 CTEAGMFALRERRVHVTQEDFELAVAKVLNK 390
Score = 28.7 bits (61), Expect = 0.98
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
+GI P+G+L+YGPP
Sbjct: 174 LGIPQPKGILLYGPP 188
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 126 bits (303), Expect = 5e-30
Identities = 59/123 (47%), Positives = 77/123 (62%)
Frame = -3
Query: 744 CSCMDHPGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXX 565
C PG GKT+LA+A A A F+++ + VQ ++G+G ++VRD F LAKE SP
Sbjct: 222 CLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAI 281
Query: 564 XXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCV 385
TKRFD++ DREVQR +LELLNQ+DGF VKVI ATNR DTLDP +
Sbjct: 282 IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPAL 341
Query: 384 AKT 376
++
Sbjct: 342 LRS 344
Score = 66.5 bits (155), Expect = 4e-12
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLR GRLDRK+EFPLP+ + I + KM + D+++ EE D +GA + ++
Sbjct: 339 PALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSV 398
Query: 212 CQEAGMHAVQ 183
C EAGM A++
Sbjct: 399 CVEAGMIALR 408
Score = 30.7 bits (66), Expect = 0.24
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++G++PP+G LM+GPP
Sbjct: 213 KLGVKPPKGCLMFGPP 228
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 120 bits (290), Expect = 2e-28
Identities = 60/126 (47%), Positives = 78/126 (61%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LA+AVA F++VV S V KY+GE R++R++F AKE+ P
Sbjct: 175 PGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEI 234
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
+RF T ADRE+QR L+ELLNQMDGFD K+IMATNR DTLDP + + P
Sbjct: 235 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLR--PG 292
Query: 366 RQKNRV 349
R ++
Sbjct: 293 RLDRKI 298
Score = 62.9 bits (146), Expect = 5e-11
Identities = 32/75 (42%), Positives = 43/75 (57%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGRLDRKIE PLP+ + I K++ E+D E V D +GAD+ +
Sbjct: 286 PALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNV 345
Query: 212 CQEAGMHAVQGKQIY 168
EAG A++ + Y
Sbjct: 346 VTEAGFIAIKEDRDY 360
Score = 33.9 bits (74), Expect = 0.026
Identities = 11/16 (68%), Positives = 16/16 (100%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI+PP+GVL+YGPP
Sbjct: 160 RVGIKPPKGVLLYGPP 175
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 120 bits (288), Expect = 3e-28
Identities = 60/126 (47%), Positives = 78/126 (61%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+ A+AVA+ A FIRV+GSE VQKY+GEG RMVR++F +A+
Sbjct: 222 PGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEI 281
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
RFD G D EVQR +LEL+ Q+DGFD N+KV+ ATNR +TLD + + P
Sbjct: 282 DAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMR--PG 339
Query: 366 RQKNRV 349
R +V
Sbjct: 340 RIDRKV 345
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
AL+RPGR+DRK+EF LPD + I M + ++ E +GA++ ++C
Sbjct: 334 ALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVC 393
Query: 209 QEAGMHAVQGKQ 174
EAGM A++ ++
Sbjct: 394 TEAGMFAIRARR 405
Score = 32.7 bits (71), Expect = 0.060
Identities = 9/16 (56%), Positives = 16/16 (100%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI+PP+G+++YGPP
Sbjct: 207 KLGIDPPKGIMLYGPP 222
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 87.8 bits (208), Expect = 2e-18
Identities = 47/116 (40%), Positives = 65/116 (56%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGCGKT+LAKAVA+ A FI + G E + KY+GE R VR VF A+ +SP
Sbjct: 535 PGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFDEL 594
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
+R D+ + A R++ LL ++DG + V VI ATNR D +DP + +
Sbjct: 595 DAMVPRRDDSLSEAS---SRVVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLR 647
Score = 65.7 bits (153), Expect = 7e-12
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGCGKTMLA A+A+ FI + V GE + VR+VF AK +P
Sbjct: 217 PGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEI 276
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTN--VKVIMATNRADTLDPCVAK 379
KR AQ +R + L ++++ F++T V VI ATNR D+LD + +
Sbjct: 277 DAVTPKRESAQREMERRIVAQFLTCMDEL-SFEKTDGKPVLVIGATNRPDSLDSALRR 333
Score = 52.4 bits (120), Expect = 7e-08
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDR---VSGADI 222
PA+LRPGRLD+ + LPD ++ I T+T + L +EV+L + + R +R SGAD+
Sbjct: 643 PAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNL-DVLGRDERCSNFSGADL 701
Query: 221 NAICQEAGMHAVQ 183
A+ +EA + A++
Sbjct: 702 AALVREAAVTALR 714
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -2
Query: 766 GIEPPRGVLMYGPP 725
GI PPRGVL++GPP
Sbjct: 204 GIHPPRGVLLHGPP 217
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
+GI P GVL++GPP
Sbjct: 521 VGISAPTGVLLWGPP 535
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 87.4 bits (207), Expect = 2e-18
Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA A F+ V GSEF++ ++G GP VRD+F A++N+P
Sbjct: 338 PGTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEI 397
Query: 546 XXXATKR-FDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWP 370
R Q G++ E + L +LL +MDGF + ++ V TNR D LDP + + P
Sbjct: 398 DAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLR--P 455
Query: 369 SRQKNRVSTSR 337
R +++ R
Sbjct: 456 GRFDRQITIDR 466
Score = 49.2 bits (112), Expect = 6e-07
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDL--EEFVARPDRVSGADIN 219
PALLRPGR DR+I PD + IF + +D +DL + +GADI
Sbjct: 450 PALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIM 509
Query: 218 AICQEAGMHAVQGKQIYCPSLKISKRVTRITS 123
+C E + A + + + + R+T+
Sbjct: 510 NVCNEGALIAARSNSNEVQMVHFEQAIERVTA 541
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 82.6 bits (195), Expect = 6e-17
Identities = 44/116 (37%), Positives = 60/116 (51%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGC KT+ AKA+A FI V G E K++GE R VR VF+ A++ SP
Sbjct: 591 PGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEI 650
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
R G D R++ LLN++DG + NV V+ ATNR D +DP + +
Sbjct: 651 DALTANR-----GEDNSSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMR 701
Score = 59.7 bits (138), Expect = 5e-10
Identities = 40/126 (31%), Positives = 59/126 (46%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTM+ +AVA A + G V KYLGE +R +F A+ + P
Sbjct: 322 PGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEI 381
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
A KR + + A+ R + LL +DG V VI ATNR +++D + + P
Sbjct: 382 DALAPKRTEDVSEAE---SRAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRR--PG 436
Query: 366 RQKNRV 349
R + +
Sbjct: 437 RLEKEI 442
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL+RPGRLDR + P+ ++ I KM +++VDL+ + + SGA++ A+
Sbjct: 697 PALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVAL 756
Query: 212 CQEAGMHAV 186
CQEAG+ A+
Sbjct: 757 CQEAGLIAM 765
Score = 46.8 bits (106), Expect = 3e-06
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKM-NLSDEVDLEEFVARPDRVSGADINAI 213
AL RPGRL+++IE +PD+ + I + + + N ++ LE+ +R GAD+ A+
Sbjct: 431 ALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAV 490
Query: 212 CQEAGMHAVQ 183
+EA + A++
Sbjct: 491 VREAALRAIK 500
Score = 32.7 bits (71), Expect = 0.060
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++G+ PP+GVL+YGPP
Sbjct: 576 RLGVRPPKGVLLYGPP 591
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -2
Query: 763 IEPPRGVLMYGPP 725
I PPRGVL+YGPP
Sbjct: 310 IMPPRGVLLYGPP 322
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 78.2 bits (184), Expect = 1e-15
Identities = 45/116 (38%), Positives = 62/116 (53%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA+A+ +A FI V G E + + GE VRD+F A+ +P
Sbjct: 540 PGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDEL 599
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A R A G R++ +LL +MDG + NV VI ATNR D +DP + +
Sbjct: 600 DSIAKAR-GASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMR 654
Score = 72.1 bits (169), Expect = 8e-14
Identities = 42/116 (36%), Positives = 64/116 (55%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT++A+AVA+ A F + G E + K GE +R F A++NSP
Sbjct: 267 PGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEI 326
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A KR +T + E +R++ +LL MDG +NV V+ ATNR +++DP + +
Sbjct: 327 DSIAPKR--EKTNGEVE-RRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRR 379
Score = 56.4 bits (130), Expect = 4e-09
Identities = 27/72 (37%), Positives = 41/72 (56%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL R GR DR+++ +PD + I T M L+D+VDLE+ A G+D+ ++
Sbjct: 375 PALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASL 434
Query: 212 CQEAGMHAVQGK 177
C EA M ++ K
Sbjct: 435 CSEAAMQQIREK 446
Score = 49.6 bits (113), Expect = 5e-07
Identities = 26/70 (37%), Positives = 37/70 (52%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL+RPGRLD+ I PLPD + I T ++++VDL SGAD+ +
Sbjct: 650 PALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFV 709
Query: 212 CQEAGMHAVQ 183
Q A A++
Sbjct: 710 VQRAVKLAIK 719
Score = 35.9 bits (79), Expect = 0.006
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
IGI+PPRG+LMYGPP
Sbjct: 253 IGIKPPRGILMYGPP 267
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
+ G+ P +GVL +GPP
Sbjct: 525 RFGVTPSKGVLFFGPP 540
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 74.9 bits (176), Expect = 1e-14
Identities = 39/117 (33%), Positives = 60/117 (51%)
Frame = -3
Query: 729 HPGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXX 550
+PGCGKT LA A++ FI + G E + KY+G+ + VRD+F A+ P
Sbjct: 648 YPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDE 707
Query: 549 XXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A +R TG R++ ++L QMDG + V ++ AT R D +DP + +
Sbjct: 708 FDSVAPRRGQDSTGV---TDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLR 761
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGRLD+ I LP+ ++ + + + ++ + L++ D + AD++++
Sbjct: 757 PALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSL 816
Query: 212 CQEAGMHAV 186
+A + AV
Sbjct: 817 LYDAHLIAV 825
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 70.5 bits (165), Expect = 2e-13
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKAVA + F+ + G E + Y+GE VR+VF A+ +SP
Sbjct: 697 PGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDEL 756
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTN--VKVIMATNRADTLDPCVAK 379
A R ++ + + + R++ +LL ++D + N V VI ATNR D LDP + +
Sbjct: 757 DSIAPHRGNS-SDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLR 813
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPL-PDRRQKRLIFSTITTKMNLSDEVDLEEFVAR-PDRVSGADIN 219
P+LLRPGR D+ + + K + +T L + +DL E +GAD+
Sbjct: 809 PSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMY 868
Query: 218 AICQEAGMHAVQGK 177
A+C +A + A++ K
Sbjct: 869 ALCSDAVLSAIKRK 882
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 766 GIEPPRGVLMYGPP 725
G++P GVL+YGPP
Sbjct: 684 GLKPRSGVLLYGPP 697
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 66.9 bits (156), Expect = 3e-12
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GK+ LAKAVA + F + S+ V K++GE R+VR +F +A+E P
Sbjct: 171 PGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEI 230
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQ-TTNVKVIMATNRADTLDPCVAKTWP 370
R + ++ + R RI E L QM+G + + V V+ ATN TLD + + +
Sbjct: 231 DSLCGSRSEGESESSR---RIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRRRFE 287
Query: 369 SR 364
R
Sbjct: 288 KR 289
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 64.5 bits (150), Expect = 2e-11
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLA+AVA F + GS+F + Y+G G + VR++F A++ +P
Sbjct: 309 PGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDEL 368
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTN----VKVIMATNRADTLDPCVAK 379
KR +A+ A +++ L +LL +DGF + + V I ATN ++LDP + +
Sbjct: 369 DAIGQKR-NARDAA--HMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTR 425
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/68 (38%), Positives = 35/68 (51%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL RPGR DR I PLPD R + I T + L +VDL +GAD+ +
Sbjct: 421 PALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANL 480
Query: 212 CQEAGMHA 189
+A ++A
Sbjct: 481 INQAAVYA 488
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 58.0 bits (134), Expect = 1e-09
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGCGKTMLAKA+A A FI V K+ GE ++V +F LA++ P
Sbjct: 134 PGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEI 193
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDG-FDQTTNVKVIMATNRADTLDPCVAKTWP 370
+R Q + +I E ++ DG + V V+ ATNR +D + + P
Sbjct: 194 DTFLRQR---QRTDHEAMAQIKAEFMSMWDGLLSGQSRVLVLGATNRPADIDEAIRRRMP 250
Score = 30.3 bits (65), Expect = 0.32
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -1
Query: 371 RLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQEA 201
R+ + PLP+ Q+R I K+ L D V +SG+ I +C+ A
Sbjct: 248 RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSA 304
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 54.4 bits (125), Expect = 2e-08
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVV-GSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXX 550
PG GKT++A+ + A ++V G E + KY+G+ VR +F A+
Sbjct: 313 PGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESG 372
Query: 549 XXXXATKRFDA------QTGADREV-QRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 391
DA +G D V +++ +LL +MDG DQ N+ VI TNR D +D
Sbjct: 373 LHIIIFDELDAICKKRGSSGGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDE 432
Query: 390 CVAK 379
+ +
Sbjct: 433 ALLR 436
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMN----LSDEVDLEEFVARPDRVSGADI 222
ALLRPGRL+ +E LPD + I T++M L ++VD+EE + SGA+I
Sbjct: 433 ALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEI 492
Query: 221 NAICQEAGMHA 189
+ + A A
Sbjct: 493 AGLIKSASSFA 503
Score = 25.4 bits (53), Expect = 9.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI +G+L+YGPP
Sbjct: 298 KLGINHVKGILLYGPP 313
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 53.6 bits (123), Expect = 3e-08
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Frame = -3
Query: 726 PGCGKTMLAKAVA-----HHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXX 562
PG GKT++A+A+A + +F G++ + K++GE R +R +F AK P
Sbjct: 309 PGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSII 368
Query: 561 XXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVA 382
A R Q + LL L MDG + V +I ATNR D +DP +
Sbjct: 369 FFDEIDGLAPVRSSKQEQIHASIVSTLLAL---MDGMESRGQVIIIGATNRPDAVDPALR 425
Query: 381 K 379
+
Sbjct: 426 R 426
Score = 50.8 bits (116), Expect = 2e-07
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDR-VSGADINA 216
PAL RPGR DR+ FPLPDR ++ I T + L +A + GAD+ A
Sbjct: 422 PALRRPGRFDREFYFPLPDRDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGGADLRA 481
Query: 215 ICQEAGMHAVQGKQIYCPSLKISKRV 138
+C EA ++++ K+ Y + +KR+
Sbjct: 482 LCTEAALNSI--KRTYPQLYRSTKRL 505
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
+ ++PPRGVL +GPP
Sbjct: 294 RFNMQPPRGVLFHGPP 309
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSP 571
PG GKTMLA+AVA + F + S K+LGE ++VR +F LAK+ SP
Sbjct: 501 PGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSP 552
Score = 34.3 bits (75), Expect = 0.020
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -1
Query: 371 RLDRKIEFPLPDRRQKRLIFSTITT--KMNLSDEVDLEEFVARPDRVSGADINAICQEAG 198
R R+ PLPD +RL + + K +LS E D+E V + SG+D+ A+ ++A
Sbjct: 625 RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLE-DIEAIVKATEYYSGSDLTALAKDAA 683
Query: 197 M 195
M
Sbjct: 684 M 684
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 51.6 bits (118), Expect = 1e-07
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTA-----AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXX 562
PG GKT++A+ +A + + +F GS+ + K++GE R +R +F A+ P
Sbjct: 415 PGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSII 474
Query: 561 XXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVA 382
A R Q + LL L MDG D V VI ATNR + LDP +
Sbjct: 475 FFDEIDGLAPIRSSKQEQTHSSIVSTLLAL---MDGLDTRGQVVVIGATNRPNDLDPALR 531
Query: 381 K 379
+
Sbjct: 532 R 532
Score = 47.6 bits (108), Expect = 2e-06
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLS-DEVDLEEFVARPDRVSGADINA 216
PAL RPGR DR+ FPLP+++ + I + + E L GAD+ A
Sbjct: 528 PALRRPGRFDREFYFPLPNKQARMKILEINSLHFSPKIPESYLLHLAESTSGYGGADLKA 587
Query: 215 ICQEAGMHAVQG--KQIYCPSLK 153
+C EA ++AV+ QIY S K
Sbjct: 588 LCTEAALNAVRRTFPQIYTSSDK 610
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 763 IEPPRGVLMYGPP 725
I PPRGVL +GPP
Sbjct: 403 ITPPRGVLFHGPP 415
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENS 574
PG GKTMLA+AVA A F + S KYLG+ ++VR +F +AK +
Sbjct: 421 PGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQT 471
Score = 32.7 bits (71), Expect = 0.060
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -1
Query: 371 RLDRKIEFPLPDRRQK-RLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQEAGM 195
R ++ PLP++ + + + + +++ E DLEE V + SG+DI A+ ++A M
Sbjct: 545 RFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEEDLEELVNLTEGYSGSDITALAKDAAM 604
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 474 LLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
LLN +DG + + M TN + LDP + +
Sbjct: 327 LLNALDGVTSSDERIIFMTTNHPEKLDPALVR 358
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 107 NMNFINKRHFSVDCVLICLQLE 42
N++F+N+ SVD V+IC+ ++
Sbjct: 552 NLSFVNETTVSVDKVVICIPMD 573
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 9.1
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
Frame = +1
Query: 253 ATNSSKSTSSERFI-LVVIVEKIKRF*RLSGSGNSIFLSRRPGLSNAGVQCISTICRHYY 429
A N K SE + L + + +RF +L + N++ S ++ ++ +S + HY
Sbjct: 337 ARNKIKRLRSEPSVSLTLSISWYERFEKLMHAQNTMLRSAFSHVARLPMETVSQLLSHYT 396
Query: 430 FNISSLIKTIHLIEEFK*NPLNFSVSTSLGIKSFSSNGINFINENDCWAV 579
IS + K F ST L + S S + + W V
Sbjct: 397 ETISQYLPPSETSPIPKTPNFKFISSTLLALVSSHSEILEASTDRLIWTV 446
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 283 RMKWIWKSSWLDRTACPAPTSTPSVRRPACTLXRENRYI 167
R + W S +++ + A S RR C L R NR I
Sbjct: 195 RFRPSWDSYFMEMASLAAKRSNCMKRRVGCVLVRGNRVI 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,235
Number of Sequences: 5004
Number of extensions: 53991
Number of successful extensions: 230
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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