Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_J19
(773 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.4
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 24 1.4
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 24 1.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.4
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.8
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 4.2
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 4.2
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 23 4.2
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 22 5.5
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 416 QIVLIHWTPALLRPGRLDRKIEFPL---PDRRQKRLIFSTITTKMNLSDEVDLEE 261
+++ + W P LLR R +KI +RR K + ++K L++ +D+++
Sbjct: 296 KMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKSSKSLLANVLDIDD 350
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 416 QIVLIHWTPALLRPGRLDRKIEFPL---PDRRQKRLIFSTITTKMNLSDEVDLEE 261
+++ + W P LLR R +KI +RR K + ++K L++ +D+++
Sbjct: 296 KMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKSSKSLLANVLDIDD 350
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 416 QIVLIHWTPALLRPGRLDRKIEFPL---PDRRQKRLIFSTITTKMNLSDEVDLEE 261
+++ + W P LLR R +KI +RR K + ++K L++ +D+++
Sbjct: 296 KMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKSSKSLLANVLDIDD 350
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 416 QIVLIHWTPALLRPGRLDRKIEFPL---PDRRQKRLIFSTITTKMNLSDEVDLEE 261
+++ + W P LLR R +KI +RR K + ++K L++ +D+++
Sbjct: 296 KMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKSSKSLLANVLDIDD 350
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 416 QIVLIHWTPALLRPGRLDRKIEFPL---PDRRQKRLIFSTITTKMNLSDEVDLEE 261
+++ + W P LLR R +KI +RR K + ++K L++ +D+++
Sbjct: 296 KMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKSSKSLLANVLDIDD 350
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 416 QIVLIHWTPALLRPGRLDRKIEFPL---PDRRQKRLIFSTITTKMNLSDEVDLEE 261
+++ + W P LLR R +KI +RR K + ++K L++ +D+++
Sbjct: 296 KMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKSSKSLLANVLDIDD 350
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 24.2 bits (50), Expect = 1.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 268 WKSSWLDRTACPAPTS 221
W S WLD++A PA S
Sbjct: 260 WVSFWLDQSAVPARVS 275
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 24.2 bits (50), Expect = 1.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 268 WKSSWLDRTACPAPTS 221
W S WLD++A PA S
Sbjct: 260 WVSFWLDQSAVPARVS 275
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 416 QIVLIHWTPALLRPGRLDRKIEFPL---PDRRQKRLIFSTITTKMNLSDEVDLEE 261
+++ + W P LLR R +KI +RR K + ++K L++ +D+++
Sbjct: 364 KMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKSSKSLLANVLDIDD 418
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 416 QIVLIHWTPALLRPGRLDRKIEFPL---PDRRQKRLIFSTITTKMNLSDEVDLEE 261
+++ + W P LLR R +KI +RR K + ++K L++ +D+++
Sbjct: 364 KMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKSSKSLLANVLDIDD 418
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.8
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +3
Query: 207 LTDGVDVGAGHAVRSSHELFQIHFIRKVHLGSDCRENQTFLTPIW 341
L DG D G A SS L + + H+ +NQ T W
Sbjct: 13 LLDGYDAGVRPAENSSQPLAVVFGLSLHHIIDVDEKNQILTTNCW 57
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 268 WKSSWLDRTACPA 230
W S WL+R A PA
Sbjct: 239 WVSFWLNRNATPA 251
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 268 WKSSWLDRTACPA 230
W S WL+R A PA
Sbjct: 239 WVSFWLNRNATPA 251
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 268 WKSSWLDRTACPA 230
W S WL+R A PA
Sbjct: 178 WVSFWLNRNATPA 190
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 22.2 bits (45), Expect = 5.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 391 GVQCISTICRHYYFNISSLIKTIHLIEEFK*NPLNFSVSTSL 516
G+QC++ +C ++ S ++ TI L K P+ S+ L
Sbjct: 384 GIQCLTVVCLAFW---SFIVSTILLWFINKIIPIRMSIHDEL 422
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,998
Number of Sequences: 438
Number of extensions: 3951
Number of successful extensions: 21
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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