Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J15
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    29   1.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   3.2  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   4.2  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.5  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   7.3  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   9.6  

>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 402 APTTSF-SLSDFPYSLYSPLLTMRPVLSKPQLNS 500
           +P+TS  S+  FP+S+  P L + P LS   LNS
Sbjct: 323 SPSTSQNSVQPFPFSIQQPPLHLEPPLSSNTLNS 356


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 540  AGPQTTLPCILVKVSSVGASRVLAALSIMENTKNTGNRLTKRMLLV 403
            A PQ  +  + V   S  ++R  AAL+IM++ K    RL ++  LV
Sbjct: 1769 AHPQALVYPLTVAAKSQSSARQNAALAIMDSLKTHSPRLVEQARLV 1814


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -2

Query: 568 DALTSGIRIGWSTDDSSLHLGESEFSWGFESTGRIVNNGEYKEYGKSLNEKDVVGAYLD 392
           + + S +R+ W T  + L     E+        ++V NG+ K+    +N  DV+G  L+
Sbjct: 178 EIMNSTLRVRWLTLFAKLSTKSPEYLEELIKDDKLVINGDNKDILLQINFVDVLGIMLE 236


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 419 FVKRFPVFFVFSIIDNAASTLEAPTELTFTKMQGR 523
           F+  F +  +F ++ + +S L  PT+ T  K++GR
Sbjct: 46  FIFAFGLMTLFVLVYSISSNLHTPTQFTGHKVRGR 80


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
 Frame = +3

Query: 294 SVRSPSALRGNSKAVPSGAPLSVYDTTHGSDSKSK*APTTSF---------SLSDFPYSL 446
           S RS +  R    A P+  P S+YD  + + S S   P TSF         + S   +S 
Sbjct: 18  SQRSMNLNRATLLAPPT--PSSLYDANNSTSSTSSQKPNTSFTSLFGPRKQTTSSPSFSH 75

Query: 447 YSPLLTMRP---VLSKPQLNSLSPRCKEESSVDQPILI 551
            +PL  + P     S+PQ+ +  P  +  S  D+P L+
Sbjct: 76  AAPLHPLSPPSFTHSQPQIQA-QPVPRRPSLFDRPNLV 112


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 291 YSVRSPSALRGNSKAVPSGAPLSVYDTTHGSDSKSK*APTTSFSLSDFPYSLYSPLLTMR 470
           + +R+P+ +   + + PS A  S  DTT   +     + TTS S S    S  S  LT  
Sbjct: 330 HEIRAPAIIVRETSSHPSTAVPSENDTTESENDTLSESSTTSISSSPSENSDTSDDLTKV 389

Query: 471 PVLSKPQLN-SLSPRCKEES 527
              +K  +N ++S +  +ES
Sbjct: 390 DSPNKSLVNDNVSAKHDKES 409


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -2

Query: 568 DALTSGIRIGWSTDDSSLHLGESEFSWGFESTGRI 464
           + + + IR+ W  +D+++ LG +   W  +  GR+
Sbjct: 179 EKVANKIRVDWEKEDAAVLLGIALTGWSEQVPGRL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,121
Number of Sequences: 5004
Number of extensions: 43235
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)