Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J15
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa...    40   0.001
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c...    30   1.6  
At4g17980.1 68417.m02676 no apical meristem (NAM) family protein...    29   4.8  
At3g46610.1 68416.m05060 pentatricopeptide (PPR) repeat-containi...    28   6.4  

>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1280

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
 Frame = -2

Query: 559 TSGIR-IGWST----DDSSLHLGESEFSWGFESTGRIVN--NGEYKEYGKSLNEKDVVGA 401
           TSGI+ +GW+T          +G+++ S+ F+  GR V+  N E + YG+S    DV+G 
Sbjct: 157 TSGIQQLGWATLACPFTDQKGVGDADDSYAFD--GRRVSKWNKEAEPYGQSWVAGDVIGC 214

Query: 400 YLDLESEPCVVSYTLNGAPLGTAFEFPRSALGDRTLYPHV-LTKNMCYKVNFG 245
            +DL  +   + +  NG  LG AF   R        YP + L++    ++NFG
Sbjct: 215 CIDLNCDE--IYFYRNGVSLGAAFTGIRKLGPGFGYYPAISLSQGERCELNFG 265


>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to DEAD box
           protein DDX1 [Gallus gallus] GI:16323037,  ryanodine
           receptor [Caenorhabditis elegans] GI:1871447; contains
           Pfam profile PF00622: SPRY domain
          Length = 509

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -2

Query: 559 TSGIRIGWSTDDSSLH--LGESEFSWGF-ESTGRIVNNGEYKEYG-KSLNEKDVVGAYLD 392
           T   R+GWSTD   L   +G    S+GF +  G  ++    + Y  +   E DV+G Y++
Sbjct: 325 TGHTRLGWSTDKGDLQAPVGYDGNSFGFRDIDGCKIHKALRETYAEEGYKEGDVIGFYIN 384

Query: 391 L 389
           L
Sbjct: 385 L 385


>At4g17980.1 68417.m02676 no apical meristem (NAM) family protein
           NAM (GI:6066595) [Petunia x hybrida]
          Length = 262

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 469 RIVNNGEYKEYGKSL---NEKDVVGAYLDLESEPC 374
           R+V   E K+  KSL   NE+D+   Y  L + PC
Sbjct: 156 RVVKKNELKKNSKSLKNKNEQDIGSCYSSLATSPC 190


>At3g46610.1 68416.m05060 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 665

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 574 EKDALTSGIRIGWSTDDSSLHLGESEFS 491
           ++  L S   +GW+T+   L LGE E S
Sbjct: 72  KRSLLGSSFGVGWATEQRELELGEEEVS 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,248,315
Number of Sequences: 28952
Number of extensions: 228685
Number of successful extensions: 684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)