Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_J12
(858 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54020.2 68414.m06155 myrosinase-associated protein, putative... 31 0.98
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 30 1.7
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 30 1.7
At1g68730.1 68414.m07855 zinc finger (DNL type) family protein c... 30 1.7
At3g53440.2 68416.m05898 expressed protein 30 2.3
At3g53440.1 68416.m05897 expressed protein 30 2.3
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 29 4.0
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 5.2
>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
strong similarity to myrosinase-associated proteins
GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
[Brassica napus]; contains InterPro Entry IPR001087
Lipolytic enzyme, G-D-S-L family
Length = 372
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 653 LACGSPAFIATLLFDPSMSALPIIAKQNSPSVGLFT 546
+ C S + + LL P + L I+ QN P+VGLFT
Sbjct: 1 MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 516 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 340
T+V+++ L+ C CD + N +H ++ +K P AGL C +A+
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691
Query: 339 SLAESGKD 316
S GK+
Sbjct: 692 SPDSGGKE 699
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 101 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 274
K S + +PR R LY D + + + K+T S+D+ NG + S+ E R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196
>At1g68730.1 68414.m07855 zinc finger (DNL type) family protein
contains Pfam profile PF05180: DNL zinc finger
Length = 170
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Frame = +2
Query: 14 FYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 193
FY+ +L+RS+ + TP+Q +S + + ++L PD S D+ +
Sbjct: 39 FYKQQNPISALHRSKTTRVIEVVTPKQRNRSFSVFGSLADDSKLNPDEESNDS---AEVA 95
Query: 194 SIDLRDPNGLRRRVSRFECET------RLVKSHCLE 283
SID++ P R F C + RL+ H E
Sbjct: 96 SIDIKLPR--RSLQVEFTCNSCGERTKRLINRHAYE 129
>At3g53440.2 68416.m05898 expressed protein
Length = 512
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 98 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 277
RKS+ +P R+ L++RD++VK + D +P RR RLV S
Sbjct: 4 RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63
Query: 278 LEPPDSRGSTVSIS 319
DSR ++IS
Sbjct: 64 SPIEDSRSKKLNIS 77
>At3g53440.1 68416.m05897 expressed protein
Length = 512
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 98 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 277
RKS+ +P R+ L++RD++VK + D +P RR RLV S
Sbjct: 4 RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63
Query: 278 LEPPDSRGSTVSIS 319
DSR ++IS
Sbjct: 64 SPIEDSRSKKLNIS 77
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = +2
Query: 35 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 214
G S+ R +H+A + + + ++ +TD + + E + D S KK DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544
Query: 215 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 334
LRR + +T K L P++ + + S S P A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +2
Query: 92 QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 271
+E K+S D S+ H E + S A KK+ +S+ +D + +S E +++
Sbjct: 95 EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152
Query: 272 HCLEPPDSRGSTVS 313
C E S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,153,275
Number of Sequences: 28952
Number of extensions: 379321
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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