Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_J11
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 58 6e-09
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 51 1e-06
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 48 9e-06
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 46 5e-05
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 42 8e-04
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 30 2.5
12_01_0767 - 6956758-6957138,6957491-6957581,6957796-6957861,695... 29 4.4
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 29 4.4
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 29 4.4
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 28 7.7
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 58.4 bits (135), Expect = 6e-09
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Frame = -2
Query: 719 FDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVSDKLDCGVSMKWTAGSA 543
FDT F+K N L + + D ++N G S Y KVS G + + S
Sbjct: 301 FDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVSKTSAVGAELAHSFSSN 360
Query: 542 DTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKV 363
+ G ++ALD+ ++ A+ NN + Q + RP +T+S +D + + KV
Sbjct: 361 ENTLTFGTQHALDELTTVKARFNNFGMASALIQHEFRPKSLVTISTEVDTKAIDKSS-KV 419
Query: 362 GVALELEP 339
G++L L+P
Sbjct: 420 GLSLVLKP 427
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 51.2 bits (117), Expect = 1e-06
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Frame = -2
Query: 716 DTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVSDKLD--CGVSMKWTAGS 546
DT F+K + L + D A ++N G S Y V+ + G + + +
Sbjct: 255 DTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASYYHLVNKESGTAAGAELTHSFST 314
Query: 545 ADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHK 366
+ G ++ALD ++ A+ NN ++ Q + RP LTLSA +D + + K
Sbjct: 315 KENTLSFGMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVDTKAIDKAS-K 373
Query: 365 VGVALELEP 339
VG++L L+P
Sbjct: 374 VGLSLVLKP 382
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 48.0 bits (109), Expect = 9e-06
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Frame = -2
Query: 719 FDTQKAKFSKNNFALGYQSGDF-ALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWT--AG 549
FDT KF+K + A+G D+ A D G S + DK V + T
Sbjct: 185 FDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTVKVSGVYHLDDKQKSSVVAELTRRLS 244
Query: 548 SADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGH 369
+ + VG Y +D + ++ A++NN + Q +++P LT+S D + +
Sbjct: 245 TNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQHEVKPKSVLTISGEFDTKALDR-PP 303
Query: 368 KVGVALELEP 339
K G+AL L P
Sbjct: 304 KFGLALALRP 313
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 45.6 bits (103), Expect = 5e-05
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Frame = -2
Query: 719 FDTQKAKFSKNNFALGYQSGDF--ALHTNVDNGKDFGGSIYQKVS--DKLDCGVSMKWTA 552
FDT + F+K N AL + D +LH N ++G S Y V G + +
Sbjct: 147 FDTATSNFTKYNAALSLTNSDLIASLHLN-NHGDTLIASYYHLVKHHSNTAVGAELSHSF 205
Query: 551 GSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGG 372
++ G++++LD ++ A+ NN + Q + RP +T+S +D +
Sbjct: 206 SRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQHEWRPKSLITISGEVDTKAIEK-S 264
Query: 371 HKVGVALELE 342
KVG++L L+
Sbjct: 265 TKVGLSLVLK 274
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 41.5 bits (93), Expect = 8e-04
Identities = 25/99 (25%), Positives = 42/99 (42%)
Frame = -2
Query: 713 TQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADTL 534
T + +S+ F+ Y+ DF + N +GG+ Q V+ L G W +
Sbjct: 173 TNEPHYSQGMFSFDYKGKDFRSQFQLGNNAFYGGNYIQSVTKNLSLGTEAFWLGQQRKSG 232
Query: 533 FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTL 417
G A+Y + + +I L+ L Y QK+ V+L
Sbjct: 233 VGFVARYDTKKMVAT-GQIATTGLVSLSYVQKVSEKVSL 270
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = -2
Query: 611 SIYQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLR 432
S QKVS+K+ + + D G Y L Q L KI+ ++ +++L
Sbjct: 259 SYVQKVSEKVSLASDFMYNHMAKDVTASFGYDYMLRQ-CRLRGKIDTNGVVSALLEERLT 317
Query: 431 PGVTLTLSAAID 396
PGV LSA +D
Sbjct: 318 PGVNFVLSAELD 329
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -2
Query: 551 GSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGG 372
G+AD+ FG+G L S + +++ S +GL QKL+P V + ++ + F A G
Sbjct: 645 GNADSTFGMG----LTSGQSQFSALDSSSRLGLKPWQKLKPSVEILCNSQANHYAFLALG 700
Query: 371 HKVGV 357
V
Sbjct: 701 SYTSV 705
>12_01_0767 -
6956758-6957138,6957491-6957581,6957796-6957861,
6958079-6958194
Length = 217
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 597 GI*QAGLRRQHEVDG-GFGRHIIRSWSEVRAGPRR 496
G+ QAG RR+ V G GFG W E R G R
Sbjct: 167 GLAQAGHRREAVVVGDGFGTEAAPHWGEARGGRER 201
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -3
Query: 562 SGRRVRPTHYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQA 425
S + + TH++ RS+ ++ +RLC P TT+P T+ + +A
Sbjct: 349 SSAKAQGTHHASSVRSS-FSNSRLCLPSRTTNPPPKNATSNSKTEA 393
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 605 YQKVSDKLDCGVSMKWTAGSADTLFGVG 522
+QKV D+LDCG+ + T G + +G
Sbjct: 469 WQKVCDRLDCGLEINNTVGGMRKILSLG 496
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 336 ENITKPTLVDKYILLSQPNSVYRESISIVEI 244
E + + T+VDK I LS PNSV + + E+
Sbjct: 141 EGVAEATIVDKQIPLSGPNSVVGRAFVVHEL 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,078,835
Number of Sequences: 37544
Number of extensions: 473088
Number of successful extensions: 1230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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