Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_J11
(813 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34... 55 6e-08
At5g15090.1 68418.m01768 porin, putative / voltage-dependent ani... 54 1e-07
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34... 41 0.001
At3g20000.1 68416.m02530 porin family protein low similarity to ... 36 0.024
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34... 34 0.098
At5g37610.1 68418.m04530 hypothetical protein 32 0.52
At5g39500.1 68418.m04783 pattern formation protein, putative sim... 29 4.9
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 28 6.4
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c... 28 6.4
At2g27770.1 68415.m03365 expressed protein 28 6.4
At1g05080.1 68414.m00510 F-box family protein contains F-box dom... 28 6.4
>At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 276
Score = 54.8 bits (126), Expect = 6e-08
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Frame = -2
Query: 719 FDTQKAKFSKNNFALGYQSGDFALHTNV-DNGKDFGGSIYQKVSDKLD--CGVSMKWTAG 549
FDT+ F+K N L + D V D G S Y V+ + G +
Sbjct: 148 FDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLS 207
Query: 548 SADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGH 369
S D+ VG +++LD S+ A++N+ + Q + +P T+S +D ++ +
Sbjct: 208 SKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSA- 266
Query: 368 KVGVALELEP 339
KVG+AL L+P
Sbjct: 267 KVGLALALKP 276
>At5g15090.1 68418.m01768 porin, putative / voltage-dependent
anion-selective channel protein, putative similar to
SP|P42055 34 kDa outer mitochondrial membrane protein
porin (Voltage-dependent anion-selective channel
protein) (VDAC) {Solanum tuberosum}; contains Pfam
profile PF01459: Eukaryotic porin; identical to cDNA
voltage-dependent anion-selective channel protein
GI:4006940
Length = 274
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Frame = -2
Query: 719 FDTQKAKFSKNNFALGYQSGDFALHTNV-DNGKDFGGSIYQKVSDKLDCGVSMKWTAGSA 543
++T+ F N + D + D G+ S YQ VS G + +
Sbjct: 148 YNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVVGAEISHNFTTK 207
Query: 542 DTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKV 363
+ VG ++ALD ++ A++NN + Q + RP T+S +D + + KV
Sbjct: 208 ENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSA-KV 266
Query: 362 GVALELEP 339
G+AL L+P
Sbjct: 267 GIALALKP 274
>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 276
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = -2
Query: 719 FDTQKAKFSKNNFALGYQSGDFALHTNV-DNGKDFGGSIYQKVSD-KLDCGVSMKWTAGS 546
+DT F+K N + D L + D G S + K V + S
Sbjct: 148 YDTTSKTFTKYNAGISVTKPDACLSIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFS 207
Query: 545 A-DTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGH 369
+ VG YA+D ++ AK+NN +G Q ++ P +T+S+ ID +
Sbjct: 208 TNENTITVGGLYAIDHSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSEIDTKALEK-HP 266
Query: 368 KVGVALELEP 339
+ G++L L+P
Sbjct: 267 RFGLSLALKP 276
>At3g20000.1 68416.m02530 porin family protein low similarity to
haymaker protein [Mus musculus] GI:17834089,
mitochondrial outer membrane protein MOM35 [Mus
musculus] GI:6650562; contains Pfam profile PF01459:
Eukaryotic porin
Length = 309
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = -2
Query: 602 QKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGV 423
QK+SDK+ + S D VG Y L Q A + KI++ + +++L G+
Sbjct: 227 QKISDKVSLATDFMYNYFSRDVTASVGYDYMLRQ-ARVRGKIDSNGVASALLEERLSMGL 285
Query: 422 TLTLSAAID 396
LSA +D
Sbjct: 286 NFLLSAELD 294
>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 226
Score = 34.3 bits (75), Expect = 0.098
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = -2
Query: 542 DTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKV 363
+T VG YA+D ++ AK+N+ G Q + P +T+S ID + + ++
Sbjct: 160 ETTVTVGGLYAVDHLTNVKAKLNSNGKFGALLQHEGLPKSIVTISGEIDTKTLDK-YPRL 218
Query: 362 GVALELEP 339
G++L L+P
Sbjct: 219 GLSLSLKP 226
>At5g37610.1 68418.m04530 hypothetical protein
Length = 163
Score = 31.9 bits (69), Expect = 0.52
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Frame = -2
Query: 695 SKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKLDCGVSMKWTAGSADTLFGVGA 519
+K N L + D ++D F S YQ++ K CG K+ F +G
Sbjct: 47 TKANTVLSLITEDTTTTFSIDKKASLFTASYYQRLHSKTVCGAEAKYILSDKSNSFSIGK 106
Query: 518 KYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQN-FNAGGHKVGVALEL 345
++ D + A ++ + G + + TL I G+ N + G+A+EL
Sbjct: 107 RHLFGDDDLIQALLSVSN--GGSMRVLFQHHWTLKSFFTIAGERLLNHSSQRFGLAVEL 163
>At5g39500.1 68418.m04783 pattern formation protein, putative similar
to SP|Q42510 Pattern formation protein EMB30 {Arabidopsis
thaliana}; contains Pfam profile PF01369: Sec7 domain
Length = 1443
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 587 CQIPSGRLNRRNLYHCLRLCGEQSHQIGNLEQSCSWRTLLFVYQTGVCTP 736
C++ G LNR Y G++S ++ L TLL + TGV P
Sbjct: 1340 CRLWVGVLNRLETYMSTEFRGKRSEKVNELIPELLKNTLLVMKATGVLLP 1389
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 499 TRLCTPRSTTSPSSVLVTNRN 437
TR+ P ++SPSSVL+TN N
Sbjct: 514 TRILPPSVSSSPSSVLLTNSN 534
>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 610
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 351 RTRALENITKPTLVDKYILLSQPNSVYRESISIVEIT 241
RT+ LE T T DKY+ S PN + +++ +++
Sbjct: 207 RTKELERATGDTTKDKYLPKSSPNRLKAMEVALYKVS 243
>At2g27770.1 68415.m03365 expressed protein
Length = 320
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 205 LSCFPKNAVRLFH*LFLNVCKQFASKYSLTRLLINKS 95
+SCF +N++ + H L ++ SKYS + I+ S
Sbjct: 5 VSCFSENSINVTHPLSISSSSSSCSKYSTNNVCISPS 41
>At1g05080.1 68414.m00510 F-box family protein contains F-box domain
Pfam:PF00646
Length = 439
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/48 (33%), Positives = 32/48 (66%)
Frame = -1
Query: 333 NITKPTLVDKYILLSQPNSVYRESISIVEITCIVPGAFKTQYSFPAFL 190
++++ TL D+ IL++ P+S Y S++ +E+ C+V +K + S +FL
Sbjct: 141 SLSELTLSDQ-ILVNVPSSAYLPSLTELELICVV---YKDEDSLVSFL 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,938,749
Number of Sequences: 28952
Number of extensions: 375104
Number of successful extensions: 945
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -