Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J09
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   2.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   7.3  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   9.6  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   9.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.6  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 551 NVDKYENARNEIKITILFFL*CVPRR--TDYFCLF*IYFIQKCRSFIYRLRHYEVCRVS 381
           N   +    + I  T++++L   P    T   C+F I+F+   R+     RH   C +S
Sbjct: 310 NTTPHRRNASSIIYTLMYYLIIAPTLLITSAICMFTIFFVPCARTLWAICRHLRTCPLS 368


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 485 HIKGKTKLLFLFHSEHFHIYLHFKPSLDFHKXSSPAV 595
           ++KG  +  F    E++ IYL FK   D+   ++P +
Sbjct: 539 YVKGDNRFCFKQLLEYYDIYLKFKLLADWRLLTNPVL 575


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 54  KSNSVCEHSGIMNNLAVLSAILNLRSLKCNCFVALT*CRDRIKL 185
           +S+     +G  NNL +LS++ NL+S   N  V  T  R   K+
Sbjct: 501 RSSFATNDTGSYNNLELLSSVTNLKSPNENDRVTKTQSRRETKV 544


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 291 NVFEIRHKKKISLKTCSLSLNILRRCMIVLADPADFVVPQ 410
           N  E+ +++ +S+K   L   IL+  + +   P+D  VPQ
Sbjct: 15  NACEVLNRQTVSVKQSILHAQILKLFLELSKPPSDIHVPQ 54


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 343  SEQVLRLIFFLCRISKTFMACR 278
            SEQV  L   LC+  KT + CR
Sbjct: 988  SEQVSFLFLMLCKQCKTVLCCR 1009


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,662
Number of Sequences: 5004
Number of extensions: 60859
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)