Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J08
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    33   0.047
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    29   0.77 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   4.1  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -2

Query: 652 VTLDFPASQRSTYRAQRWAWAHELWRPRSVSCYIGTESTLLPKWNRRKLVSFLRSEPGP 476
           V + +  + R  Y  +  +   +L+ P  V CY+ + S+ LP W   ++  +   +P P
Sbjct: 452 VNILYDTAHRDAYNVRSLSTVFQLYNP-VVGCYLSSSSSSLPSWGFGQIEMYCDPDPDP 509


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 32  GGRAHSPPTVKWLLEPIDIY 91
           GG  H P TV WLL P DIY
Sbjct: 235 GGPLHDPNTVMWLLRP-DIY 253


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = -1

Query: 392 DVRIPQAGTKFSNEICT*QLFTIGFHVEGITSCNNNQTRKLINGVITGGGTSCESARVGT 213
           +V IP AGT    EI   +L+T  F   G TS        +I    T   T    ++  T
Sbjct: 366 EVVIPTAGTVTETEISGSELYTSTFPANGTTS---GTVEVVIPTAGTRTVTKISGSKFFT 422

Query: 212 TTTPIS 195
           TTT  S
Sbjct: 423 TTTDAS 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,130
Number of Sequences: 5004
Number of extensions: 70903
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)