Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J08
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)                 29   5.8  
SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)                      28   7.7  
SB_26006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 159 HPSNRNALLLHGGNRCGGGTHPCGLTRGPSTSNYAIYKFAGLI 287
           H + ++ L   GG    GG H C + R    S   I++++GL+
Sbjct: 113 HDTAQHVLACFGG---AGGQHACAIARSLGMSTVFIHRYSGLL 152


>SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)
          Length = 500

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 639 KSRVTLWVXVXQEPDXWLRST-XTLQYEQFVFALXKXGIKINFLXRRFCXFSGXF 800
           KS V LW  +    D W R T    ++ ++++   K G+K+    R F      F
Sbjct: 180 KSPVVLWEVMDNVQDIWTRITDPDERWTEYIYRNFKEGLKVRHQMRGFAGICRLF 234


>SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)
          Length = 372

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 600 GRGLTSSGGRALSPATSARSRHCCRSGTEGNW*VFFVL 487
           GRG  S+GG  +     A   + CR GTE  W   FVL
Sbjct: 166 GRG-QSNGGIPVLVVERAMVGYLCRQGTEQRWDTCFVL 202


>SB_26006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +2

Query: 482 RLRTKKTYQFPSVP-----LRQQCRLRADVAGDRARP 577
           R+R ++ Y F   P     L +Q RLR  V G+R+RP
Sbjct: 13  RMRLRREYNFTPPPFGPDELDRQLRLRTPVRGERSRP 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,948,874
Number of Sequences: 59808
Number of extensions: 582092
Number of successful extensions: 1193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)