Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J08
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46267-16|CAO78720.1|  576|Caenorhabditis elegans Hypothetical p...    28   6.8  
AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    28   9.0  

>Z46267-16|CAO78720.1|  576|Caenorhabditis elegans Hypothetical
           protein F49E2.2c protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 211 VVPTRADSQEVPPPVITPFISLRV*LLLHDVIPSTWKPIVNN 336
           ++P   D Q VPP  ++P ++  +  ++HD + + + P   N
Sbjct: 52  IIPMSVDEQAVPP-EVSPSMAANIPQMVHDQLAAQFLPAAKN 92


>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +1

Query: 301 VIPSTWKPIVNNC*VHISLENLVPACGIRTSVHR*IQMHRTSYPLXHD--DLKLPKKFVY 474
           ++  TW  + N+         LV A G R       + HR+S+    +    K+ KK ++
Sbjct: 311 ILTDTWNQVFNS---KNDSGGLVVANGRRKRFETKFKTHRSSHIEISNLHKTKMTKKIMF 367

Query: 475 QAPAQNEENLPISFC 519
           Q P  +  N P  FC
Sbjct: 368 QFPKISHFNFPKQFC 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,066,028
Number of Sequences: 27780
Number of extensions: 419768
Number of successful extensions: 894
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)