Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J08
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.82 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.82 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.9  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.4  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   7.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -2

Query: 646 LDFPASQRSTYRAQRWAWAHELWRP 572
           L  P +    YR     W H +WRP
Sbjct: 66  LRLPENMSEDYRILDVDWLHNIWRP 90


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -3

Query: 666 LAPTK*PSTFQLHSGVRIALNAGRGLTSSGGRALSPATSARSRHCCRSGTEGNW 505
           LA  K  +   L S   +  N+G G T+S  R  SPA  + S       T   W
Sbjct: 521 LAVAKQQNQVPLTSSSNVNNNSGNGNTNSSARDSSPAIESISVDSGSINTVAEW 574


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 296 CNNNQTRKLINGVITGGGTSCESARV 219
           CN    RK+I+GV+ G  +S  S +V
Sbjct: 203 CNKTAVRKVISGVV-GAASSVTSIQV 227


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 73  GAHRHLPRKCATHLEI*VLRSQYSYNGYLTLR 168
           G  R   R+  T  +   L  ++ YN YLT R
Sbjct: 5   GCPRRRGRQTYTRFQTLELEKEFHYNHYLTRR 36


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 53 PTVKWLLEPIDIYH 94
          P + WL + I++YH
Sbjct: 52 PEITWLKDGIELYH 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,207
Number of Sequences: 438
Number of extensions: 5812
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)