Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J06
         (842 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06740.1 68418.m00762 lectin protein kinase family protein co...    30   2.2  
At3g03940.1 68416.m00412 protein kinase family protein contains ...    29   3.9  
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...    28   6.8  
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont...    28   6.8  
At3g21140.1 68416.m02671 expressed protein                             28   6.8  
At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase, p...    28   8.9  
At3g49290.1 68416.m05387 expressed protein                             28   8.9  

>At5g06740.1 68418.m00762 lectin protein kinase family protein
           contains Legume lectins beta-chain signature,
           PROSITE:PS00307 and Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 652

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +2

Query: 272 LSGSPPAHMNVECNWKNRPSRVLLNWLWQVFR 367
           +SG  P+++ V+ N +N  +  ++NWLW+++R
Sbjct: 527 VSGKKPSYVLVKDN-QNNYNNSIVNWLWELYR 557


>At3g03940.1 68416.m00412 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 701

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 349 PVEEDAAGAVLPVALDVHVRGGGARQGHLPGGRGVAPRVP 230
           P+ E A   VLP       RGGG  +G+    +G AP  P
Sbjct: 21  PLVEQAENIVLPPQTATRRRGGGRGRGNAALAKGAAPPRP 60


>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 331 AGAVLPVALDVHVRGGGARQGHLPGGRGVAPR 236
           AG V+P  L   VR  G+  G   GGR   PR
Sbjct: 532 AGQVVPPTLSALVRSSGSGYGGSGGGRNFRPR 563


>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 1192

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 413 PSFPNLSFPQPVAKHLTPAGARSLAGGRHATPTFGAESNGVSRNSRA 553
           PS    SFP P  +H +P G  S  GG   +      SN  S  + A
Sbjct: 21  PSRNRNSFPPPTNRHPSPIGRMSSGGGGGGSAAPRQRSNSTSVKAAA 67


>At3g21140.1 68416.m02671 expressed protein
          Length = 387

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 404 WYLPSFPNLSFPQPVAKHLTPAGARSLAGGRHATPTFGAESNG 532
           W+  S P   FP+    + +  G R  A  R+ TP+ G ++NG
Sbjct: 32  WFCNSLPKTQFPKLRLSNGSSHGLRIQALLRNETPSEGEDNNG 74


>At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase,
           putative similar to mevalonate diphosphate decarboxylase
           [Arabidopsis thaliana] gi|2288887|emb|CAA74700
          Length = 419

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 195 GIVAWGIGCGEDGTPGVYVDVSNLRTWID 109
           G V W +G  EDG+  V V +++ + W D
Sbjct: 171 GFVKWTMGSKEDGSDSVAVQLADEKHWDD 199


>At3g49290.1 68416.m05387 expressed protein
          Length = 312

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 437 PQPVAKHLTPAGARSLAGGRHATPTFGAESNGVSRNSRAMS*NRFPLLKS 586
           P PV K  + + +      R AT +F +      ++ R++S +RFPLL+S
Sbjct: 179 PPPVRKSTSQSSSPRQPPQRSATFSFTSTIPKKEQDKRSVSPHRFPLLRS 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,654
Number of Sequences: 28952
Number of extensions: 273714
Number of successful extensions: 626
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)