Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_J05
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 34 0.15
05_06_0281 + 26912419-26913099 33 0.20
02_02_0063 + 6481568-6481570,6481922-6482470 33 0.36
11_07_0002 - 27171791-27172222 32 0.62
09_02_0279 + 6702517-6702948 32 0.62
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 30 2.5
11_06_0610 - 25449085-25453284 29 3.3
07_03_0315 - 16674660-16674712,16674966-16675158 29 3.3
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 29 3.3
11_01_0763 + 6402901-6403971,6404581-6404826 29 4.4
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 4.4
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 4.4
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582... 29 4.4
12_02_0635 - 21430245-21431156 29 5.8
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 29 5.8
07_01_0862 - 7172083-7172931 29 5.8
02_01_0289 - 1937125-1937385,1937570-1937611 28 7.7
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 26 8.8
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = +2
Query: 479 RPHPLRSPLDLHRGGGRHLQGAGTYGRIPASGP 577
R HP R P D GGG G G YG P SGP
Sbjct: 70 RFHPYRGPSDHSGGGGYRSGGGGEYGE-PGSGP 101
>05_06_0281 + 26912419-26913099
Length = 226
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 235 QPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRD 408
+P G P + P P+ ++ +R+P GP W PG+P T+T L G D
Sbjct: 82 RPVGPTPPPPSHPVVPTPTQLAADDDGGLLRRPGGPTPPSPWHPGVP--TQTQLAGGD 137
>02_02_0063 + 6481568-6481570,6481922-6482470
Length = 183
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -3
Query: 431 ATGRRCIASRPGRLVLVQRGIPGHQRHRLGGPTG 330
ATGRR A+RPGRLV + + G +R GP G
Sbjct: 130 ATGRRDAATRPGRLVAMAATV-GSRREERRGPAG 162
>11_07_0002 - 27171791-27172222
Length = 143
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 426 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 304
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>09_02_0279 + 6702517-6702948
Length = 143
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 426 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 304
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 29.9 bits (64), Expect = 2.5
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Frame = +1
Query: 142 LNDSSALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVS 321
+ND A H D + G+ PD QP A P+D QP PS + TS
Sbjct: 179 INDLDAGRH---DAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPSS--SPATTSPAH 233
Query: 322 VRQPVGPPRRCRWCPGIPRW-TRTSLPGRDAIHRRPV 429
R+ G P P W + LP R R P+
Sbjct: 234 PRRAHGQVLLGSH-PRGPHWRVQGHLPQRQGPRRVPI 269
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +1
Query: 172 TSDPLRGQNPDEVGGLPRSTLQ-PDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPR 348
T P + P+E P S + P AHP P+E S E+S + + PP
Sbjct: 767 TPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPS 826
Query: 349 RCRWCPGIPRWTRTSLPGRDA 411
P P ++S P +A
Sbjct: 827 GHEGTPPSP--VKSSSPPPEA 845
>07_03_0315 - 16674660-16674712,16674966-16675158
Length = 81
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 428 TGRRCIASRPGRLVLVQRGIPGHQRHRLGGPTGCRTETADVSEPSIRLEGSVG 270
TG + + S GR +L I +R R+G P GC+ + S I L VG
Sbjct: 11 TGEKGVRSGVGRDILRDEKIK--ERKRMGQPAGCQADLLICSPVKINLFSQVG 61
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 316 VSVRQPVGPPRRCRWCPGIPRWTR 387
+ + + V PP R WCP RW R
Sbjct: 1 MEIARVVAPPLRLAWCPASRRWGR 24
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +3
Query: 201 G*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLGTAARRAAQ 347
G GRGA R RG G DGA + RRL AA R A+
Sbjct: 54 GGGRGAATHQGRRRWRGVGSGGGGDGAATSRRRLARQPAAAVAAARCAR 102
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 396 QAGSGPAGYSGTPAAPSGRPDGLPYRDG 313
++GSG AG G+ A GR DG RDG
Sbjct: 118 RSGSGKAGCVGSRADQDGRLDGREVRDG 145
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 173 RPIPSEVRTRMR*GGYRGQHYNQTARLTPR 262
R PSE+R+R R G RG+ Y+Q +PR
Sbjct: 121 RKKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>07_03_0369 -
17356806-17356934,17357145-17357278,17357989-17358247,
17358322-17358410,17358644-17358794,17358889-17359032,
17359358-17359477,17359595-17359769,17359842-17360215
Length = 524
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 133 AHPLNDSSALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAA---HPKDAQPTEPSRRIEGS 303
A P + S L PT+ L P G LPRS A HP+DA P+ PS R +G
Sbjct: 26 ASPEDGSPFLRLPTASDL----PVPAGQLPRSAAVGLIRALNLHPRDASPS-PSSRGDGD 80
Query: 304 ETSAVSVRQPV 336
+ V +P+
Sbjct: 81 VPAGTLVERPI 91
>12_02_0635 - 21430245-21431156
Length = 303
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Frame = +1
Query: 172 TSDPLRGQNPDEVGGLPRSTLQPDGA----AHPKDA---QPTEPSRRIEGSETSAVSV-- 324
T P R ++P G PR+ P G+ A P QP P+ E E V V
Sbjct: 208 TPPPERRESPSPPRGRPRTPPPPPGSPKKPATPGAVVVEQPGPPTDHREAGELVMVDVVV 267
Query: 325 RQPVGPPRRCRWCP 366
R P PPR CP
Sbjct: 268 RPPTTPPRPYVGCP 281
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 171 DVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 290
D + P EP + +A T RR GSP PA A +A
Sbjct: 135 DAAADPAKEPSGSKAGSAAATGGRRTGSPPPSPAPVAKDA 174
>07_01_0862 - 7172083-7172931
Length = 282
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 482 PHPLRSPLDLHRGGGRHLQGAGTYGRIPASGPGSTATDRCGK 607
P P+ PL GGG+ + +G GRIPA + A + G+
Sbjct: 241 PRPVW-PLLASGGGGKRKKQSGCGGRIPALNTAAAAVEETGR 281
>02_01_0289 - 1937125-1937385,1937570-1937611
Length = 100
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +3
Query: 138 PTKRLLCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPA 272
PT LC + PD SP R P G G + RR G G A
Sbjct: 36 PTSGSLCAMLPDSCSPHR--PQLGVGCRQIGVRRRRTGGMNGSGA 78
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 25.8 bits (54), Expect(2) = 8.8
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +3
Query: 93 HGVVSRPRA-QGF*SPPTKRLLCTLTPDV-----RSPPRSEPG*GRGATAVNTTTRRRGS 254
HG +S PR+ +P +R +TP V RSP P RG A + + RG
Sbjct: 50 HGALSAPRSGDEEITPWWRRSPSAVTPPVYPHVERSP---SPPIARGWPADDDERQERGE 106
Query: 255 PQGRPA 272
P G PA
Sbjct: 107 PSGSPA 112
Score = 20.6 bits (41), Expect(2) = 8.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 345 QTVPLVSRNTPLDQNQPA 398
Q P V ++TPL +PA
Sbjct: 153 QPAPHVEQSTPLPAKEPA 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,714,317
Number of Sequences: 37544
Number of extensions: 487821
Number of successful extensions: 1870
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1866
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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