Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J05
         (814 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1...    31   1.2  
At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    30   1.6  
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ...    30   2.1  
At3g09000.1 68416.m01053 proline-rich family protein                   29   4.9  
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-...    28   8.5  
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-...    28   8.5  
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1...    28   8.5  

>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
           SP|P14714 Phytochrome C {Arabidopsis thaliana}
          Length = 1111

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 137 WALKSLGPRSAHNTMQIVESHIPRAHLLRGDLVGGSALYPKKK 9
           W LKS G  +   T  ++ES  P A +L   + G +A+Y  +K
Sbjct: 465 WVLKSHGGNTGFTTESLMESGYPDASVLGESICGMAAVYISEK 507


>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
            PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 118  PKDFRAHPLNDSSALLHPTSDPLRGQ--NPDEVGGLPRST-LQPDGAAHPKDAQPTEPSR 288
            PK  +A P  DS   L P   P   Q  +   +  LP++    PD  + PK     +P+ 
Sbjct: 944  PKTNKASPDQDSPPKLVPKEKPAAKQRGSASSLSFLPKTDKASPDQDSPPKLLPKEKPAA 1003

Query: 289  RIEGSETSAVSV 324
            + +GS TS+ S+
Sbjct: 1004 KQQGSATSSSSL 1015


>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 493

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -3

Query: 167 CKSAEESFSGWALKSLGPRSAHNTMQIVESHIPRAHLLRGDLVGGSAL 24
           C +  +SFS +     G R++HN ++I+E+H  RA+     L+G  A+
Sbjct: 344 CVTCNKSFSSYQALG-GHRASHNKVKILENHQARAN-AEASLLGTEAI 389


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 33/122 (27%), Positives = 42/122 (34%), Gaps = 2/122 (1%)
 Frame = +3

Query: 192 SEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLGTAARRAAQTVPLVSRN 371
           S  G  R  +   T TRR  +P       +     R  N  R  T   RA  T    + +
Sbjct: 148 SSSGSSRSTSRPATPTRRSTTPT---TSTSRPVTTRASN-SRSSTPTSRATLTAARATTS 203

Query: 372 T--PLDQNQPAGSGRDTPSTGRSNHSTXXXXXXXXXXXXLTPSGRPLTFTGGEAATYRGP 545
           T  P      +GS R    T RSN                TP+ RP T TG    + + P
Sbjct: 204 TAAPRTTTTSSGSARSATPT-RSNPRPSSASSKKPVSRPATPTRRPSTPTGPSIVSSKAP 262

Query: 546 GR 551
            R
Sbjct: 263 SR 264


>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 948

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +1

Query: 259 KDAQPTEPSRRIEGSETSAVSVRQPV 336
           ++++PTE S++I+ + ++ VS R+PV
Sbjct: 488 EESEPTETSKKIQPTSSAMVSSRKPV 513


>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 971

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +1

Query: 259 KDAQPTEPSRRIEGSETSAVSVRQPV 336
           ++++PTE S++I+ + ++ VS R+PV
Sbjct: 511 EESEPTETSKKIQPTSSAMVSSRKPV 536


>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
           (KTN1) [Arabidopsis thaliana] GI:14133602
          Length = 523

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 23  RGPNLLRGPRAKGARGVCETQRSAWCCEQTAGPR 124
           RGP    GP ++G RG   ++ +A     TAG +
Sbjct: 155 RGPTTRTGPASRGGRGGATSKSTAGARSSTAGKK 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,768,881
Number of Sequences: 28952
Number of extensions: 312396
Number of successful extensions: 900
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)