Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J04
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    29   0.74 
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    28   1.3  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    27   3.0  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    27   3.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   4.0  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   9.2  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   9.2  

>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 314 LSVRSITNSLRS-RYNQLEMLGNEGTYLNWKITNGDVEIELPDRATVKSNHAWVLKLAT 141
           ++ R   N +R    N LE+  +  TYL+ ++ + +    L  + TVKS+H+   +L T
Sbjct: 406 VATREAANKIRLVDLNDLELQKDLSTYLSKELASTEKAFRLVKQQTVKSSHSHYQELIT 464


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 584 GNALINVGPTKEGTIAPIFEERLLALGDWLQINGEAIYSSSPWEYQNDTLNGKVWY 417
           G A+  V  T   ++   FEE LL+  D     G+A+ S+S  +Y    ++G   Y
Sbjct: 58  GEAIPKVIDTTGESVREAFEEFLLSFSDDRVAGGDALPSASQEKYYVQQIHGLAMY 113


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 555 SWTDIYERVSPAANCCYDLLEHSSI 629
           S   I ERVSP    CYD+  H++I
Sbjct: 121 SSNSIAERVSPPPGFCYDVHPHNNI 145


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 493 WSQSPSAKSRSSNIGAIVPSLVGPTFMSAFPPQLTVVTICWSILQ 627
           +SQ P     SS++GA +P L+     S    QL  + +  ++LQ
Sbjct: 284 FSQWPFDLHASSSVGANLPELISEELSSVKEEQLLFIEVVAAVLQ 328


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 178 TVALSGSSISTSPFVIFQFKYVPSLPNISS 267
           + A S    ST+PF I   K  P L NISS
Sbjct: 358 STATSAPKKSTAPFAINAVKPAPGLSNISS 387


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 82  NRRYRLSELHNNMLLSISYVVASLRTQA*FDFTVALSGSSI---STSPFVIFQFKYVPSL 252
           NR+ R     +  L    +    L +Q  F+    LS SSI   STSP + F  K+  S 
Sbjct: 172 NRKDRYYLFSDKGLADFFFKTHFLFSQLSFECIPHLSDSSIQLSSTSPVIPFTLKWNNSC 231

Query: 253 PN 258
           PN
Sbjct: 232 PN 233


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 460 GEELYMASPFIWSQSPSAKSRSSNI 534
           G E+Y+ S  +W Q PS    ++NI
Sbjct: 897 GVEVYLKSFLLWIQEPSKSHYNANI 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,469
Number of Sequences: 5004
Number of extensions: 64300
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)